2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 import jalview.datamodel.AlignmentI;
22 import jalview.structure.StructureSelectionManager;
25 * abstract interface implemented by alignment panels holding an alignment view
30 public interface AlignmentViewPanel extends OOMHandlerI
33 AlignmentI getAlignment();
35 StructureSelectionManager getStructureSelectionManager();
38 * repaint the alignment view after a datamodel update.
40 * @param updateOverview
41 * - if true, the overview panel will also be updated and repainted
44 void paintAlignment(boolean updateOverview);
47 * automatically adjust annotation panel height for new annotation whilst
48 * ensuring the alignment is still visible.
50 void adjustAnnotationHeight();