2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import jalview.datamodel.SequenceFeature;
24 import jalview.datamodel.SequenceI;
26 import java.awt.Color;
27 import java.util.Hashtable;
28 import java.util.List;
32 * Abstract feature renderer interface
37 public interface FeatureRenderer
40 Color findFeatureColour(Color col, SequenceI sequenceI, int r);
44 Object getFeatureStyle(String ft);
46 void setColour(String ft, Object ggc);
48 AlignViewportI getViewport();
50 FeaturesDisplayedI getFeaturesDisplayed();
52 Map<String,Object> getFeatureColours();
54 void findAllFeatures(boolean newMadeVisible);
56 Map<String,Object> getDisplayedFeatureCols();
58 List<String> getFeatureGroups();
60 List<String> getGroups(boolean visible);
62 void setGroupVisibility(List<String> toset, boolean visible);
64 void setGroupVisibility(String group, boolean visible);
66 List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
68 boolean isTransparencyAvailable();
70 String[] getDisplayedFeatureTypes();
72 String[] getDisplayedFeatureGroups();
74 void setAllVisible(List<String> featureTypes);
76 void setVisible(String featureType);