2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 package jalview.appletgui;
24 import java.awt.event.*;
26 import jalview.datamodel.*;
27 import jalview.util.MessageManager;
29 public class Finder extends Panel implements ActionListener
37 SearchResults searchResults;
43 public Finder(final AlignmentPanel ap)
58 jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("action.find"), 340, 120);
60 frame.addWindowListener(new WindowAdapter()
62 public void windowClosing(WindowEvent evt)
64 ap.highlightSearchResults(null);
67 textfield.requestFocus();
70 public void actionPerformed(ActionEvent evt)
72 if (evt.getSource() == textfield)
77 else if (evt.getSource() == findNext)
82 else if (evt.getSource() == findAll)
88 else if (evt.getSource() == createNewGroup)
90 createNewGroup_actionPerformed();
94 public void createNewGroup_actionPerformed()
96 SequenceI[] seqs = new SequenceI[searchResults.getSize()];
97 SequenceFeature[] features = new SequenceFeature[searchResults
100 for (int i = 0; i < searchResults.getSize(); i++)
102 seqs[i] = searchResults.getResultSequence(i);
104 features[i] = new SequenceFeature(textfield.getText().trim(),
105 "Search Results", null, searchResults.getResultStart(i),
106 searchResults.getResultEnd(i), "Search Results");
109 if (ap.seqPanel.seqCanvas.getFeatureRenderer().amendFeatures(seqs,
112 ap.alignFrame.sequenceFeatures.setState(true);
113 av.showSequenceFeatures(true);
114 ap.highlightSearchResults(null);
118 void doSearch(boolean findAll)
120 if (ap.av.applet.currentAlignFrame != null)
122 ap = ap.av.applet.currentAlignFrame.alignPanel;
125 createNewGroup.setEnabled(false);
126 jalview.analysis.Finder finder = new jalview.analysis.Finder(
127 av.getAlignment(), av.getSelectionGroup(), seqIndex, resIndex);
128 finder.setCaseSensitive(caseSensitive.getState());
129 finder.setFindAll(findAll);
131 String searchString = textfield.getText();
133 finder.find(searchString);
134 seqIndex = finder.getSeqIndex();
135 resIndex = finder.getResIndex();
136 searchResults = finder.getSearchResults();
137 Vector idMatch = finder.getIdMatch();
138 boolean haveResults = false;
139 // set or reset the GUI
140 if ((idMatch.size() > 0))
143 ap.idPanel.highlightSearchResults(idMatch);
147 ap.idPanel.highlightSearchResults(null);
150 if (searchResults.getSize() > 0)
153 createNewGroup.setEnabled(true);
158 searchResults = null;
161 // if allResults is null, this effectively switches displaySearch flag in
163 ap.highlightSearchResults(searchResults);
164 // TODO: add enablers for 'SelectSequences' or 'SelectColumns' or
165 // 'SelectRegion' selection
168 ap.alignFrame.statusBar.setText(MessageManager.getString("label.finished_searching"));
176 String message = (idMatch.size() > 0) ? "" + idMatch.size()
178 if (idMatch.size() > 0 && searchResults != null
179 && searchResults.getSize() > 0)
183 if (searchResults != null)
185 message += searchResults.getSize() + " subsequence matches.";
187 ap.alignFrame.statusBar.setText(MessageManager.formatMessage("label.search_results", new String[] {searchString, message}));
192 // TODO: indicate sequence and matching position in status bar
193 ap.alignFrame.statusBar.setText(MessageManager.formatMessage("label.found_match_for", new String[]{searchString}));
198 Label jLabel1 = new Label();
200 protected TextField textfield = new TextField();
202 protected Button findAll = new Button();
204 protected Button findNext = new Button();
206 Panel jPanel1 = new Panel();
208 GridLayout gridLayout1 = new GridLayout();
210 protected Button createNewGroup = new Button();
212 Checkbox caseSensitive = new Checkbox();
214 private void jbInit() throws Exception
216 jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
217 jLabel1.setText(MessageManager.getString("action.find"));
218 jLabel1.setBounds(new Rectangle(3, 30, 34, 15));
219 this.setLayout(null);
220 textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
221 textfield.setText("");
222 textfield.setBounds(new Rectangle(40, 27, 133, 21));
223 textfield.addKeyListener(new java.awt.event.KeyAdapter()
225 public void keyTyped(KeyEvent e)
227 textfield_keyTyped(e);
230 textfield.addActionListener(this);
231 findAll.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
232 findAll.setLabel(MessageManager.getString("action.find_all"));
233 findAll.addActionListener(this);
234 findNext.setEnabled(false);
235 findNext.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
236 findNext.setLabel(MessageManager.getString("action.find_next"));
237 findNext.addActionListener(this);
238 jPanel1.setBounds(new Rectangle(180, 5, 141, 64));
239 jPanel1.setLayout(gridLayout1);
240 gridLayout1.setHgap(0);
241 gridLayout1.setRows(3);
242 gridLayout1.setVgap(2);
243 createNewGroup.setEnabled(false);
244 createNewGroup.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
245 createNewGroup.setLabel(MessageManager.getString("label.new_feature"));
246 createNewGroup.addActionListener(this);
247 caseSensitive.setLabel(MessageManager.getString("label.match_case"));
248 caseSensitive.setBounds(new Rectangle(40, 49, 126, 23));
249 jPanel1.add(findNext, null);
250 jPanel1.add(findAll, null);
251 jPanel1.add(createNewGroup, null);
252 this.add(caseSensitive);
253 this.add(textfield, null);
254 this.add(jLabel1, null);
255 this.add(jPanel1, null);
258 void textfield_keyTyped(KeyEvent e)
260 findNext.setEnabled(true);