2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.appletgui;
23 import jalview.datamodel.ColumnSelection;
24 import jalview.datamodel.HiddenColumns;
25 import jalview.datamodel.SequenceGroup;
26 import jalview.renderer.ScaleRenderer;
27 import jalview.renderer.ScaleRenderer.ScaleMark;
28 import jalview.util.MessageManager;
29 import jalview.viewmodel.ViewportListenerI;
30 import jalview.viewmodel.ViewportRanges;
32 import java.awt.Color;
33 import java.awt.FontMetrics;
34 import java.awt.Graphics;
35 import java.awt.MenuItem;
36 import java.awt.Panel;
37 import java.awt.PopupMenu;
38 import java.awt.event.ActionEvent;
39 import java.awt.event.ActionListener;
40 import java.awt.event.InputEvent;
41 import java.awt.event.MouseEvent;
42 import java.awt.event.MouseListener;
43 import java.awt.event.MouseMotionListener;
44 import java.beans.PropertyChangeEvent;
45 import java.util.List;
47 public class ScalePanel extends Panel implements MouseMotionListener,
48 MouseListener, ViewportListenerI
51 protected int offy = 4;
55 protected AlignViewport av;
59 boolean stretchingGroup = false;
61 int min; // used by mouseDragged to see if user
63 int max; // used by mouseDragged to see if user
65 boolean mouseDragging = false;
69 public ScalePanel(AlignViewport av, AlignmentPanel ap)
75 addMouseListener(this);
76 addMouseMotionListener(this);
78 av.getRanges().addPropertyChangeListener(this);
82 public void mousePressed(MouseEvent evt)
84 int x = (evt.getX() / av.getCharWidth()) + av.getRanges().getStartRes();
87 if (av.hasHiddenColumns())
89 res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(x);
98 if ((evt.getModifiers() & InputEvent.BUTTON3_MASK) == InputEvent.BUTTON3_MASK)
100 rightMouseButtonPressed(evt, res);
104 leftMouseButtonPressed(evt, res);
109 * Handles left mouse button pressed (selection / clear selections)
114 protected void leftMouseButtonPressed(MouseEvent evt, final int res)
116 if (!evt.isControlDown() && !evt.isShiftDown())
118 av.getColumnSelection().clear();
121 av.getColumnSelection().addElement(res);
122 SequenceGroup sg = new SequenceGroup();
123 for (int i = 0; i < av.getAlignment().getSequences().size(); i++)
125 sg.addSequence(av.getAlignment().getSequenceAt(i), false);
130 av.setSelectionGroup(sg);
132 if (evt.isShiftDown())
134 int min = Math.min(av.getColumnSelection().getMin(), res);
135 int max = Math.max(av.getColumnSelection().getMax(), res);
136 for (int i = min; i < max; i++)
138 av.getColumnSelection().addElement(i);
143 ap.paintAlignment(true);
148 * Handles right mouse button press. If pressed in a selected column, opens
149 * context menu for 'Hide Columns'. If pressed on a hidden columns marker,
150 * opens context menu for 'Reveal / Reveal All'. Else does nothing.
155 protected void rightMouseButtonPressed(MouseEvent evt, final int res)
157 PopupMenu pop = new PopupMenu();
160 MenuItem item = new MenuItem(MessageManager.getString("label.reveal"));
161 item.addActionListener(new ActionListener()
164 public void actionPerformed(ActionEvent e)
166 av.showColumn(reveal[0]);
168 ap.paintAlignment(true);
169 if (ap.overviewPanel != null)
171 ap.overviewPanel.updateOverviewImage();
178 if (av.getAlignment().getHiddenColumns().hasManyHiddenColumns())
180 item = new MenuItem(MessageManager.getString("action.reveal_all"));
181 item.addActionListener(new ActionListener()
184 public void actionPerformed(ActionEvent e)
186 av.showAllHiddenColumns();
188 ap.paintAlignment(true);
189 if (ap.overviewPanel != null)
191 ap.overviewPanel.updateOverviewImage();
199 pop.show(this, evt.getX(), evt.getY());
201 else if (av.getColumnSelection().contains(res))
203 MenuItem item = new MenuItem(
204 MessageManager.getString("label.hide_columns"));
205 item.addActionListener(new ActionListener()
208 public void actionPerformed(ActionEvent e)
210 av.hideColumns(res, res);
211 if (av.getSelectionGroup() != null
212 && av.getSelectionGroup().getSize() == av.getAlignment()
215 av.setSelectionGroup(null);
218 ap.paintAlignment(true);
219 if (ap.overviewPanel != null)
221 ap.overviewPanel.updateOverviewImage();
228 pop.show(this, evt.getX(), evt.getY());
233 public void mouseReleased(MouseEvent evt)
235 mouseDragging = false;
237 int res = (evt.getX() / av.getCharWidth())
238 + av.getRanges().getStartRes();
240 if (res > av.getAlignment().getWidth())
242 res = av.getAlignment().getWidth() - 1;
245 if (av.hasHiddenColumns())
247 res = av.getAlignment().getHiddenColumns()
248 .adjustForHiddenColumns(res);
251 if (!stretchingGroup)
253 ap.paintAlignment(false);
258 SequenceGroup sg = av.getSelectionGroup();
260 if (res > sg.getStartRes())
264 else if (res < sg.getStartRes())
269 stretchingGroup = false;
270 ap.paintAlignment(false);
275 * Action on dragging the mouse in the scale panel is to expand or shrink the
276 * selection group range (including any hidden columns that it spans)
281 public void mouseDragged(MouseEvent evt)
283 mouseDragging = true;
284 ColumnSelection cs = av.getColumnSelection();
286 int res = (evt.getX() / av.getCharWidth())
287 + av.getRanges().getStartRes();
288 res = Math.max(0, res);
289 res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(res);
290 res = Math.min(res, av.getAlignment().getWidth() - 1);
291 min = Math.min(res, min);
292 max = Math.max(res, max);
294 SequenceGroup sg = av.getSelectionGroup();
297 stretchingGroup = true;
298 cs.stretchGroup(res, sg, min, max);
299 ap.paintAlignment(false);
304 public void mouseEntered(MouseEvent evt)
308 ap.seqPanel.scrollCanvas(null);
313 public void mouseExited(MouseEvent evt)
317 ap.seqPanel.scrollCanvas(evt);
322 public void mouseClicked(MouseEvent evt)
328 public void mouseMoved(MouseEvent evt)
330 if (!av.hasHiddenColumns())
335 int res = (evt.getX() / av.getCharWidth())
336 + av.getRanges().getStartRes();
338 reveal = av.getAlignment().getHiddenColumns()
339 .getRegionWithEdgeAtRes(res);
345 public void update(Graphics g)
351 public void paint(Graphics g)
354 * shouldn't get called in wrapped mode as the scale above is
355 * drawn instead by SeqCanvas.drawNorthScale
357 if (!av.getWrapAlignment())
359 drawScale(g, av.getRanges().getStartRes(),
360 av.getRanges().getEndRes(), getSize().width, getSize().height);
364 // scalewidth will normally be screenwidth,
365 public void drawScale(Graphics gg, int startx, int endx, int width,
368 gg.setFont(av.getFont());
369 // Fill in the background
370 gg.setColor(Color.white);
371 gg.fillRect(0, 0, width, height);
372 gg.setColor(Color.black);
374 // Fill the selected columns
375 ColumnSelection cs = av.getColumnSelection();
376 HiddenColumns hidden = av.getAlignment().getHiddenColumns();
377 int avCharWidth = av.getCharWidth();
378 int avcharHeight = av.getCharHeight();
381 gg.setColor(new Color(220, 0, 0));
382 boolean hasHiddenColumns = hidden.hasHiddenColumns();
383 for (int sel : cs.getSelected())
385 // TODO: JAL-2001 - provide a fast method to list visible selected in a
387 if (hasHiddenColumns)
389 if (hidden.isVisible(sel))
391 sel = hidden.findColumnPosition(sel);
399 if ((sel >= startx) && (sel <= endx))
401 gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth,
407 // Draw the scale numbers
408 gg.setColor(Color.black);
411 List<ScaleMark> marks = new ScaleRenderer().calculateMarks(av, startx,
414 FontMetrics fm = gg.getFontMetrics(av.getFont());
415 int y = avcharHeight;
416 int yOf = fm.getDescent();
418 for (ScaleMark mark : marks)
420 boolean major = mark.major;
421 int mpos = mark.column; // (i - startx - 1)
422 String mstring = mark.text;
425 if (mpos * avCharWidth > maxX)
427 gg.drawString(mstring, mpos * avCharWidth, y);
428 maxX = (mpos + 2) * avCharWidth + fm.stringWidth(mstring);
433 gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + 2,
434 (mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2));
438 gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + yOf,
439 (mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2));
443 if (av.hasHiddenColumns())
445 gg.setColor(Color.blue);
447 if (av.getShowHiddenMarkers())
449 int widthx = 1 + endx - startx;
450 List<Integer> positions = hidden.findHiddenRegionPositions();
451 for (int pos : positions)
456 if (res < 0 || res > widthx)
461 gg.fillPolygon(new int[] {
462 -1 + res * avCharWidth - avcharHeight / 4,
463 -1 + res * avCharWidth + avcharHeight / 4,
464 -1 + res * avCharWidth }, new int[] { y, y, y + 2 * yOf }, 3);
471 public void propertyChange(PropertyChangeEvent evt)
473 // Respond to viewport change events (e.g. alignment panel was scrolled)
474 // Both scrolling and resizing change viewport ranges: scrolling changes
475 // both start and end points, but resize only changes end values.
476 // Here we only want to fastpaint on a scroll, with resize using a normal
477 // paint, so scroll events are identified as changes to the horizontal or
478 // vertical start value.
479 if (evt.getPropertyName().equals(ViewportRanges.STARTRES))
481 // scroll event, repaint panel