2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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20 package jalview.appletgui;
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22 import jalview.jbappletgui.*;
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23 import jalview.schemes.*;
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24 import jalview.datamodel.*;
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26 import java.awt.event.*;
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29 public class SliderPanel extends GSliderPanel
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32 boolean forConservation = true;
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35 static Frame conservationSlider;
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36 static Frame PIDSlider;
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38 public static int setConservationSlider(AlignmentPanel ap, ColourSchemeI cs, String source)
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40 SliderPanel sp = null;
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41 ConservationColourScheme ccs = (ConservationColourScheme)cs;
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43 if(conservationSlider == null)
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45 sp = new SliderPanel(ap, ccs.inc, true, cs);
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46 conservationSlider = new Frame();
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47 conservationSlider.add(sp);
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51 sp = (SliderPanel)conservationSlider.getComponent(0);
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55 conservationSlider.setTitle("Conservation Colour Increment ("+source+")");
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56 if(ap.av.alignment.getGroups()!=null)
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57 sp.setAllGroupsCheckEnabled( true );
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59 sp.setAllGroupsCheckEnabled( false);
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61 return sp.getValue();
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64 public static void showConservationSlider()
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67 PIDSlider.setVisible(false);
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69 }catch(Exception ex){}
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72 if(!conservationSlider.isVisible())
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74 jalview.bin.JalviewLite.addFrame(conservationSlider, conservationSlider.getTitle(), 420, 100);
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75 conservationSlider.addWindowListener(new WindowAdapter()
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77 public void windowClosing(WindowEvent e)
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79 conservationSlider = null;
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87 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
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89 SliderPanel pid = null;
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90 if(PIDSlider == null)
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92 pid = new SliderPanel(ap, 50, false, cs);
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93 PIDSlider = new Frame();
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98 pid = (SliderPanel)PIDSlider.getComponent(0);
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101 PIDSlider.setTitle("Percentage Identity Threshold ("+source+")");
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103 if (ap.av.alignment.getGroups() != null)
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104 pid.setAllGroupsCheckEnabled(true);
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106 pid.setAllGroupsCheckEnabled(false);
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108 return pid.getValue();
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112 public static void showPIDSlider()
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115 conservationSlider.setVisible(false);
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116 conservationSlider = null;
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117 }catch(Exception ex){}
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119 if(!PIDSlider.isVisible())
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121 jalview.bin.JalviewLite.addFrame(PIDSlider, PIDSlider.getTitle(), 420, 100);
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122 PIDSlider.addWindowListener(new WindowAdapter()
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124 public void windowClosing(WindowEvent e)
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134 public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, ColourSchemeI cs)
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138 forConservation = forConserve;
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139 undoButton.setVisible(false);
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140 applyButton.setVisible(false);
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141 if(forConservation)
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143 label.setText("Modify conservation visibility");
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144 slider.setMinimum(0);
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145 slider.setMaximum(50+slider.getVisibleAmount());
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146 slider.setUnitIncrement(1);
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150 label.setText("Colour residues above % occurence");
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151 slider.setMinimum(0);
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152 slider.setMaximum(100+slider.getVisibleAmount());
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153 slider.setBlockIncrement(1);
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157 slider.addAdjustmentListener( new AdjustmentListener()
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159 public void adjustmentValueChanged(AdjustmentEvent evt)
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161 valueField.setText( slider.getValue()+"" );
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162 valueChanged( slider.getValue() );
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166 slider.setValue(value);
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167 valueField.setText(value+"");
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170 public void valueChanged(int i)
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175 ColourSchemeI toChange = null;
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176 Vector allGroups = null;
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177 int groupIndex = 0;
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179 if(allGroupsCheck.getState())
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181 allGroups = ap.av.alignment.getGroups();
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182 groupIndex = allGroups.size()-1;
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188 while( groupIndex > -1 )
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190 if(allGroups!=null)
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191 toChange = ((SequenceGroup)allGroups.elementAt(groupIndex)).cs;
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193 if (forConservation)
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195 if (toChange instanceof ConservationColourScheme)
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196 ( (ConservationColourScheme) toChange).inc = i;
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200 ( (ResidueColourScheme) toChange).setThreshold(i);
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206 ap.seqPanel.seqCanvas.repaint();
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210 public void setAllGroupsCheckEnabled(boolean b)
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212 allGroupsCheck.setEnabled(b);
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216 public void valueField_actionPerformed(ActionEvent e)
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219 int i = Integer.parseInt(valueField.getText());
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220 slider.setValue(i);
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222 catch(Exception ex)
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224 valueField.setText( slider.getValue()+"" );
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228 public void setValue(int value)
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230 slider.setValue(value);
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232 public int getValue()
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234 return Integer.parseInt(valueField.getText());
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