2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.appletgui;
23 import jalview.datamodel.SequenceGroup;
24 import jalview.schemes.ColourSchemeI;
25 import jalview.schemes.GraduatedColor;
26 import jalview.schemes.ResidueProperties;
27 import jalview.schemes.UserColourScheme;
28 import jalview.util.MessageManager;
30 import java.awt.Button;
31 import java.awt.Color;
32 import java.awt.Component;
33 import java.awt.Container;
34 import java.awt.Dialog;
36 import java.awt.Frame;
37 import java.awt.GridLayout;
38 import java.awt.Label;
39 import java.awt.Panel;
40 import java.awt.Rectangle;
41 import java.awt.Scrollbar;
42 import java.awt.TextField;
43 import java.awt.event.ActionEvent;
44 import java.awt.event.ActionListener;
45 import java.awt.event.AdjustmentEvent;
46 import java.awt.event.AdjustmentListener;
47 import java.awt.event.MouseEvent;
48 import java.util.Vector;
50 public class UserDefinedColours extends Panel implements ActionListener,
56 SequenceGroup seqGroup;
58 Button selectedButton;
60 Vector oldColours = new Vector();
62 ColourSchemeI oldColourScheme;
66 MCview.AppletPDBCanvas pdbcanvas;
76 Object originalColour;
78 int R = 0, G = 0, B = 0;
80 public ColourSchemeI loadDefaultColours()
82 // NOT IMPLEMENTED YET IN APPLET VERSION
86 public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg)
93 oldColourScheme = seqGroup.cs;
97 oldColourScheme = ap.av.getGlobalColourScheme();
103 public UserDefinedColours(MCview.AppletPDBCanvas pdb)
105 this.pdbcanvas = pdb;
109 public UserDefinedColours(AppletJmol jmol)
115 public UserDefinedColours(FeatureRenderer fr, Frame alignframe)
118 originalColour = fr.colourPanel.getBackground();
119 originalLabel = "Feature Colour";
120 setForDialog("Select Feature Colour", alignframe);
121 setTargetColour(fr.colourPanel.getBackground());
122 dialog.setVisible(true);
125 public UserDefinedColours(Component caller, Color col1, Frame alignframe)
127 this(caller, col1, alignframe, "Select Colour");
131 * Makes a dialog to choose the colour
138 * - the parent Frame for the dialog
142 public UserDefinedColours(Component caller, Color col1, Frame alignframe,
145 this.caller = caller;
146 originalColour = col1;
147 originalLabel = title;
148 setForDialog(title, alignframe);
149 setTargetColour(col1);
150 dialog.setVisible(true);
154 * feature colour chooser
160 public UserDefinedColours(Object caller, String label, Color colour)
162 this(caller, label, colour, colour);
166 * feature colour chooser when changing style to single color
170 * @param graduatedColor
172 public UserDefinedColours(FeatureSettings me, String type,
173 GraduatedColor graduatedColor)
175 this(me, type, graduatedColor, graduatedColor.getMaxColor());
178 private UserDefinedColours(Object caller, String label, Object ocolour,
181 this.caller = caller;
182 originalColour = ocolour;
183 originalLabel = label;
187 setTargetColour(colour);
189 okcancelPanel.setBounds(new Rectangle(0, 113, 400, 35));
190 frame.setTitle(MessageManager.getString("label.user_defined_colours") + " - " + label);
191 frame.setSize(420, 200);
194 void setForDialog(String title, Container alignframe)
197 frame.setVisible(false);
199 if (alignframe instanceof Frame)
201 dialog = new Dialog((Frame) alignframe, title, true);
205 // if (alignframe instanceof JVDialog){
206 // // not 1.1 compatible!
207 // dialog = new Dialog(((JVDialog)alignframe), title, true);
209 throw new Error(MessageManager.getString("label.error_unsupported_owwner_user_colour_scheme"));
213 this.setSize(400, 123);
214 okcancelPanel.setBounds(new Rectangle(0, 123, 400, 35));
215 int height = 160 + alignframe.getInsets().top + getInsets().bottom;
218 dialog.setBounds(alignframe.getBounds().x
219 + (alignframe.getSize().width - width) / 2,
220 alignframe.getBounds().y
221 + (alignframe.getSize().height - height) / 2, width,
226 public void actionPerformed(ActionEvent evt)
228 if (evt.getSource() == okButton)
230 okButton_actionPerformed();
232 else if (evt.getSource() == applyButton)
234 applyButton_actionPerformed();
236 else if (evt.getSource() == cancelButton)
238 cancelButton_actionPerformed();
240 else if (evt.getSource() == rText)
242 rText_actionPerformed();
244 else if (evt.getSource() == gText)
246 gText_actionPerformed();
248 else if (evt.getSource() == bText)
250 bText_actionPerformed();
254 public void adjustmentValueChanged(AdjustmentEvent evt)
256 if (evt.getSource() == rScroller)
258 rScroller_adjustmentValueChanged();
260 else if (evt.getSource() == gScroller)
262 gScroller_adjustmentValueChanged();
264 else if (evt.getSource() == bScroller)
266 bScroller_adjustmentValueChanged();
275 } catch (Exception e)
281 jalview.bin.JalviewLite.addFrame(frame,
282 MessageManager.getString("label.user_defined_colours"), 420,
285 if (seqGroup != null)
287 frame.setTitle(frame.getTitle() + " (" + seqGroup.getName() + ")");
290 for (int i = 0; i < 20; i++)
292 makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i])
293 + "", ResidueProperties.aa[i]);
296 makeButton("B", "B");
297 makeButton("Z", "Z");
298 makeButton("X", "X");
299 makeButton("Gap", "'.','-',' '");
304 protected void rText_actionPerformed()
308 int i = Integer.parseInt(rText.getText());
309 rScroller.setValue(i);
310 rScroller_adjustmentValueChanged();
311 } catch (NumberFormatException ex)
316 protected void gText_actionPerformed()
320 int i = Integer.parseInt(gText.getText());
321 gScroller.setValue(i);
322 gScroller_adjustmentValueChanged();
323 } catch (NumberFormatException ex)
329 protected void bText_actionPerformed()
333 int i = Integer.parseInt(bText.getText());
334 bScroller.setValue(i);
335 bScroller_adjustmentValueChanged();
336 } catch (NumberFormatException ex)
342 protected void rScroller_adjustmentValueChanged()
344 R = rScroller.getValue();
345 rText.setText(R + "");
349 protected void gScroller_adjustmentValueChanged()
351 G = gScroller.getValue();
352 gText.setText(G + "");
356 protected void bScroller_adjustmentValueChanged()
358 B = bScroller.getValue();
359 bText.setText(B + "");
363 public void colourChanged()
365 Color col = new Color(R, G, B);
366 target.setBackground(col);
369 if (selectedButton != null)
371 selectedButton.setBackground(col);
372 selectedButton.repaint();
376 void setTargetColour(Color col)
382 rScroller.setValue(R);
383 gScroller.setValue(G);
384 bScroller.setValue(B);
385 rText.setText(R + "");
386 gText.setText(G + "");
387 bText.setText(B + "");
391 public void colourButtonPressed(MouseEvent e)
393 selectedButton = (Button) e.getSource();
394 setTargetColour(selectedButton.getBackground());
397 void makeButton(String label, String aa)
399 final Button button = new Button();
400 Color col = Color.white;
401 if (oldColourScheme != null)
405 col = oldColourScheme.findColour(aa.charAt(0), -1, null);
406 } catch (Exception ex)
410 button.setBackground(col);
411 oldColours.addElement(col);
412 button.setLabel(label);
413 button.setForeground(col.darker().darker().darker());
414 button.setFont(new java.awt.Font("Verdana", 1, 10));
415 button.addMouseListener(new java.awt.event.MouseAdapter()
417 public void mousePressed(MouseEvent e)
419 colourButtonPressed(e);
423 buttonPanel.add(button, null);
426 protected void okButton_actionPerformed()
428 applyButton_actionPerformed();
431 dialog.setVisible(false);
434 frame.setVisible(false);
437 public Color getColor()
439 return new Color(R, G, B);
442 protected void applyButton_actionPerformed()
446 if (caller instanceof FeatureSettings)
448 ((FeatureSettings) caller).setUserColour(originalLabel, getColor());
450 else if (caller instanceof AnnotationColourChooser)
452 if (originalLabel.equals("Min Colour"))
454 ((AnnotationColourChooser) caller)
455 .minColour_actionPerformed(getColor());
459 ((AnnotationColourChooser) caller)
460 .maxColour_actionPerformed(getColor());
463 else if (caller instanceof FeatureRenderer)
465 ((FeatureRenderer) caller).colourPanel.updateColor(getColor());
467 else if (caller instanceof FeatureColourChooser)
469 if (originalLabel.indexOf("inimum") > -1)
471 ((FeatureColourChooser) caller)
472 .minColour_actionPerformed(getColor());
476 ((FeatureColourChooser) caller)
477 .maxColour_actionPerformed(getColor());
484 Color[] newColours = new Color[24];
485 for (int i = 0; i < 24; i++)
487 Button button = (Button) buttonPanel.getComponent(i);
488 newColours[i] = button.getBackground();
491 UserColourScheme ucs = new UserColourScheme(newColours);
494 ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
499 if (seqGroup != null)
505 ap.av.setGlobalColourScheme(ucs);
507 ap.seqPanel.seqCanvas.img = null;
508 ap.paintAlignment(true);
510 else if (jmol != null)
512 jmol.setJalviewColourScheme(ucs);
514 else if (pdbcanvas != null)
516 pdbcanvas.setColours(ucs);
520 protected void cancelButton_actionPerformed()
524 if (caller instanceof FeatureSettings)
526 ((FeatureSettings) caller).setUserColour(originalLabel,
529 else if (caller instanceof AnnotationColourChooser)
531 if (originalLabel.equals("Min Colour"))
533 ((AnnotationColourChooser) caller)
534 .minColour_actionPerformed((Color) originalColour);
538 ((AnnotationColourChooser) caller)
539 .maxColour_actionPerformed((Color) originalColour);
542 else if (caller instanceof FeatureRenderer)
544 ((FeatureRenderer) caller).colourPanel.updateColor(originalColour);
548 else if (caller instanceof FeatureColourChooser)
550 if (originalLabel.indexOf("inimum") > -1)
552 ((FeatureColourChooser) caller)
553 .minColour_actionPerformed((Color) originalColour);
557 ((FeatureColourChooser) caller)
558 .maxColour_actionPerformed((Color) originalColour);
563 dialog.setVisible(false);
566 frame.setVisible(false);
570 Color[] newColours = new Color[24];
571 for (int i = 0; i < 24; i++)
573 newColours[i] = (Color) oldColours.elementAt(i);
574 buttonPanel.getComponent(i).setBackground(newColours[i]);
577 UserColourScheme ucs = new UserColourScheme(newColours);
581 if (seqGroup != null)
587 ap.av.setGlobalColourScheme(ucs);
589 ap.paintAlignment(true);
591 else if (jmol != null)
593 jmol.setJalviewColourScheme(ucs);
595 else if (pdbcanvas != null)
597 pdbcanvas.pdb.setColours(ucs);
600 frame.setVisible(false);
603 protected Panel buttonPanel = new Panel();
605 protected GridLayout gridLayout = new GridLayout();
607 Panel okcancelPanel = new Panel();
609 protected Button okButton = new Button();
611 protected Button applyButton = new Button();
613 protected Button cancelButton = new Button();
615 protected Scrollbar rScroller = new Scrollbar();
617 Label label1 = new Label();
619 protected TextField rText = new TextField();
621 Label label4 = new Label();
623 protected Scrollbar gScroller = new Scrollbar();
625 protected TextField gText = new TextField();
627 Label label5 = new Label();
629 protected Scrollbar bScroller = new Scrollbar();
631 protected TextField bText = new TextField();
633 protected Panel target = new Panel();
635 private void jbInit() throws Exception
637 this.setLayout(null);
638 buttonPanel.setLayout(gridLayout);
639 gridLayout.setColumns(6);
640 gridLayout.setRows(4);
641 okButton.setFont(new java.awt.Font("Verdana", 0, 11));
642 okButton.setLabel(MessageManager.getString("action.ok"));
643 okButton.addActionListener(this);
644 applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
645 applyButton.setLabel(MessageManager.getString("action.apply"));
646 applyButton.addActionListener(this);
647 cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));
648 cancelButton.setLabel(MessageManager.getString("action.cancel"));
649 cancelButton.addActionListener(this);
650 this.setBackground(new Color(212, 208, 223));
651 okcancelPanel.setBounds(new Rectangle(0, 265, 400, 35));
652 buttonPanel.setBounds(new Rectangle(0, 123, 400, 142));
653 rScroller.setMaximum(256);
654 rScroller.setMinimum(0);
655 rScroller.setOrientation(0);
656 rScroller.setUnitIncrement(1);
657 rScroller.setVisibleAmount(1);
658 rScroller.setBounds(new Rectangle(36, 27, 119, 19));
659 rScroller.addAdjustmentListener(this);
660 label1.setAlignment(Label.RIGHT);
662 label1.setBounds(new Rectangle(19, 30, 16, 15));
663 rText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
665 rText.setBounds(new Rectangle(156, 27, 53, 19));
666 rText.addActionListener(this);
667 label4.setAlignment(Label.RIGHT);
669 label4.setBounds(new Rectangle(15, 56, 20, 15));
670 gScroller.setMaximum(256);
671 gScroller.setMinimum(0);
672 gScroller.setOrientation(0);
673 gScroller.setUnitIncrement(1);
674 gScroller.setVisibleAmount(1);
675 gScroller.setBounds(new Rectangle(35, 52, 120, 20));
676 gScroller.addAdjustmentListener(this);
677 gText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
679 gText.setBounds(new Rectangle(156, 52, 53, 20));
680 gText.addActionListener(this);
681 label5.setAlignment(Label.RIGHT);
683 label5.setBounds(new Rectangle(14, 82, 20, 15));
684 bScroller.setMaximum(256);
685 bScroller.setMinimum(0);
686 bScroller.setOrientation(0);
687 bScroller.setUnitIncrement(1);
688 bScroller.setVisibleAmount(1);
689 bScroller.setBounds(new Rectangle(35, 78, 120, 20));
690 bScroller.addAdjustmentListener(this);
691 bText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
693 bText.setBounds(new Rectangle(157, 78, 52, 20));
694 bText.addActionListener(this);
695 target.setBackground(Color.black);
696 target.setBounds(new Rectangle(229, 26, 134, 79));
697 this.add(okcancelPanel, null);
698 okcancelPanel.add(okButton, null);
699 okcancelPanel.add(applyButton, null);
700 okcancelPanel.add(cancelButton, null);
701 this.add(buttonPanel, null);
702 this.add(target, null);