2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
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9 * Jalview - A Sequence Alignment Editor and Viewer
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10 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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12 * This program is free software; you can redistribute it and/or
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13 * modify it under the terms of the GNU General Public License
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14 * as published by the Free Software Foundation; either version 2
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15 * of the License, or (at your option) any later version.
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17 * This program is distributed in the hope that it will be useful,
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18 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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19 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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20 * GNU General Public License for more details.
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22 * You should have received a copy of the GNU General Public License
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23 * along with this program; if not, write to the Free Software
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24 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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27 package jalview.binding;
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29 //---------------------------------/
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30 //- Imported classes and packages -/
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31 //---------------------------------/
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33 import java.io.IOException;
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34 import java.io.Reader;
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35 import java.io.Serializable;
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36 import java.io.Writer;
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37 import java.util.Enumeration;
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38 import java.util.Vector;
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39 import org.exolab.castor.xml.MarshalException;
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40 import org.exolab.castor.xml.Marshaller;
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41 import org.exolab.castor.xml.Unmarshaller;
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42 import org.exolab.castor.xml.ValidationException;
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43 import org.xml.sax.ContentHandler;
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46 * Class JalviewModelSequence2.
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48 * @version $Revision$ $Date$
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50 public class JalviewModelSequence2 implements java.io.Serializable {
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53 //--------------------------/
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54 //- Class/Member Variables -/
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55 //--------------------------/
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60 private java.util.Vector _items;
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67 public JalviewModelSequence2() {
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69 _items = new Vector();
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70 } //-- jalview.binding.JalviewModelSequence2()
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78 * Method addJalviewModelSequence2Item
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82 * @param vJalviewModelSequence2Item
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84 public void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
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85 throws java.lang.IndexOutOfBoundsException
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87 _items.addElement(vJalviewModelSequence2Item);
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88 } //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item)
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91 * Method addJalviewModelSequence2Item
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96 * @param vJalviewModelSequence2Item
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98 public void addJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
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99 throws java.lang.IndexOutOfBoundsException
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101 _items.insertElementAt(vJalviewModelSequence2Item, index);
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102 } //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item)
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105 * Method enumerateJalviewModelSequence2Item
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109 * @return Enumeration
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111 public java.util.Enumeration enumerateJalviewModelSequence2Item()
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113 return _items.elements();
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114 } //-- java.util.Enumeration enumerateJalviewModelSequence2Item()
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117 * Method getJalviewModelSequence2Item
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122 * @return JalviewModelSequence2Item
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124 public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int index)
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125 throws java.lang.IndexOutOfBoundsException
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127 //-- check bounds for index
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128 if ((index < 0) || (index > _items.size())) {
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129 throw new IndexOutOfBoundsException();
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132 return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
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133 } //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int)
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136 * Method getJalviewModelSequence2Item
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140 * @return JalviewModelSequence2Item
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142 public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()
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144 int size = _items.size();
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145 jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];
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146 for (int index = 0; index < size; index++) {
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147 mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
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150 } //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()
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153 * Method getJalviewModelSequence2ItemCount
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159 public int getJalviewModelSequence2ItemCount()
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161 return _items.size();
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162 } //-- int getJalviewModelSequence2ItemCount()
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171 public boolean isValid()
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176 catch (org.exolab.castor.xml.ValidationException vex) {
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180 } //-- boolean isValid()
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189 public void marshal(java.io.Writer out)
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190 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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193 Marshaller.marshal(this, out);
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194 } //-- void marshal(java.io.Writer)
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203 public void marshal(org.xml.sax.ContentHandler handler)
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204 throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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207 Marshaller.marshal(this, handler);
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208 } //-- void marshal(org.xml.sax.ContentHandler)
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211 * Method removeAllJalviewModelSequence2Item
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214 public void removeAllJalviewModelSequence2Item()
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216 _items.removeAllElements();
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217 } //-- void removeAllJalviewModelSequence2Item()
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220 * Method removeJalviewModelSequence2Item
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225 * @return JalviewModelSequence2Item
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227 public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int index)
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229 java.lang.Object obj = _items.elementAt(index);
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230 _items.removeElementAt(index);
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231 return (jalview.binding.JalviewModelSequence2Item) obj;
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232 } //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int)
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235 * Method setJalviewModelSequence2Item
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240 * @param vJalviewModelSequence2Item
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242 public void setJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
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243 throws java.lang.IndexOutOfBoundsException
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245 //-- check bounds for index
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246 if ((index < 0) || (index > _items.size())) {
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247 throw new IndexOutOfBoundsException();
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249 _items.setElementAt(vJalviewModelSequence2Item, index);
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250 } //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item)
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253 * Method setJalviewModelSequence2Item
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257 * @param jalviewModelSequence2ItemArray
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259 public void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)
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262 _items.removeAllElements();
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263 for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++) {
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264 _items.addElement(jalviewModelSequence2ItemArray[i]);
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266 } //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item)
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276 public static java.lang.Object unmarshal(java.io.Reader reader)
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277 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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279 return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class, reader);
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280 } //-- java.lang.Object unmarshal(java.io.Reader)
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286 public void validate()
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287 throws org.exolab.castor.xml.ValidationException
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289 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
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290 validator.validate(this);
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291 } //-- void validate()
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