2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
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9 * Jalview - A Sequence Alignment Editor and Viewer
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10 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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12 * This program is free software; you can redistribute it and/or
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13 * modify it under the terms of the GNU General Public License
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14 * as published by the Free Software Foundation; either version 2
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15 * of the License, or (at your option) any later version.
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17 * This program is distributed in the hope that it will be useful,
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18 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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19 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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20 * GNU General Public License for more details.
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22 * You should have received a copy of the GNU General Public License
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23 * along with this program; if not, write to the Free Software
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24 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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27 package jalview.binding;
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29 //---------------------------------/
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30 //- Imported classes and packages -/
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31 //---------------------------------/
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33 import java.io.Serializable;
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34 import java.util.Enumeration;
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35 import java.util.Vector;
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36 import org.exolab.castor.xml.Marshaller;
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37 import org.exolab.castor.xml.Unmarshaller;
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40 * Class JalviewModelSequence2Item.
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42 * @version $Revision$ $Date$
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44 public class JalviewModelSequence2Item implements java.io.Serializable {
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47 //--------------------------/
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48 //- Class/Member Variables -/
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49 //--------------------------/
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52 * Field _userColourSchemeList
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54 private java.util.Vector _userColourSchemeList;
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61 public JalviewModelSequence2Item() {
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63 _userColourSchemeList = new Vector();
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64 } //-- jalview.binding.JalviewModelSequence2Item()
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72 * Method addUserColourScheme
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76 * @param vUserColourScheme
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78 public void addUserColourScheme(jalview.binding.UserColourScheme vUserColourScheme)
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79 throws java.lang.IndexOutOfBoundsException
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81 _userColourSchemeList.addElement(vUserColourScheme);
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82 } //-- void addUserColourScheme(jalview.binding.UserColourScheme)
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85 * Method addUserColourScheme
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90 * @param vUserColourScheme
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92 public void addUserColourScheme(int index, jalview.binding.UserColourScheme vUserColourScheme)
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93 throws java.lang.IndexOutOfBoundsException
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95 _userColourSchemeList.insertElementAt(vUserColourScheme, index);
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96 } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)
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99 * Method enumerateUserColourScheme
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103 * @return Enumeration
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105 public java.util.Enumeration enumerateUserColourScheme()
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107 return _userColourSchemeList.elements();
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108 } //-- java.util.Enumeration enumerateUserColourScheme()
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111 * Method getUserColourScheme
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116 * @return UserColourScheme
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118 public jalview.binding.UserColourScheme getUserColourScheme(int index)
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119 throws java.lang.IndexOutOfBoundsException
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121 //-- check bounds for index
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122 if ((index < 0) || (index > _userColourSchemeList.size())) {
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123 throw new IndexOutOfBoundsException();
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126 return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);
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127 } //-- jalview.binding.UserColourScheme getUserColourScheme(int)
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130 * Method getUserColourScheme
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134 * @return UserColourScheme
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136 public jalview.binding.UserColourScheme[] getUserColourScheme()
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138 int size = _userColourSchemeList.size();
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139 jalview.binding.UserColourScheme[] mArray = new jalview.binding.UserColourScheme[size];
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140 for (int index = 0; index < size; index++) {
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141 mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(index);
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144 } //-- jalview.binding.UserColourScheme[] getUserColourScheme()
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147 * Method getUserColourSchemeCount
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153 public int getUserColourSchemeCount()
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155 return _userColourSchemeList.size();
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156 } //-- int getUserColourSchemeCount()
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159 * Method removeAllUserColourScheme
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162 public void removeAllUserColourScheme()
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164 _userColourSchemeList.removeAllElements();
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165 } //-- void removeAllUserColourScheme()
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168 * Method removeUserColourScheme
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173 * @return UserColourScheme
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175 public jalview.binding.UserColourScheme removeUserColourScheme(int index)
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177 java.lang.Object obj = _userColourSchemeList.elementAt(index);
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178 _userColourSchemeList.removeElementAt(index);
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179 return (jalview.binding.UserColourScheme) obj;
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180 } //-- jalview.binding.UserColourScheme removeUserColourScheme(int)
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183 * Method setUserColourScheme
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188 * @param vUserColourScheme
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190 public void setUserColourScheme(int index, jalview.binding.UserColourScheme vUserColourScheme)
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191 throws java.lang.IndexOutOfBoundsException
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193 //-- check bounds for index
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194 if ((index < 0) || (index > _userColourSchemeList.size())) {
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195 throw new IndexOutOfBoundsException();
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197 _userColourSchemeList.setElementAt(vUserColourScheme, index);
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198 } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)
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201 * Method setUserColourScheme
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205 * @param userColourSchemeArray
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207 public void setUserColourScheme(jalview.binding.UserColourScheme[] userColourSchemeArray)
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210 _userColourSchemeList.removeAllElements();
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211 for (int i = 0; i < userColourSchemeArray.length; i++) {
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212 _userColourSchemeList.addElement(userColourSchemeArray[i]);
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214 } //-- void setUserColourScheme(jalview.binding.UserColourScheme)
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