2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 package jalview.commands;
21 import jalview.analysis.*;
22 import jalview.datamodel.*;
24 public class OrderCommand implements CommandI
34 public OrderCommand(String description, SequenceI[] seqs, AlignmentI al)
36 this.description = description;
38 this.seqs2 = al.getSequencesArray();
43 public String getDescription()
53 public void doCommand(AlignmentI[] views)
55 AlignmentSorter.setOrder(al, seqs2);
58 public void undoCommand(AlignmentI[] views)
60 AlignmentSorter.setOrder(al, seqs);