2 * Jalview - A Sequence Alignment Editor and Viewer
3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
5 * This program is free software; you can redistribute it and/or
6 * modify it under the terms of the GNU General Public License
7 * as published by the Free Software Foundation; either version 2
8 * of the License, or (at your option) any later version.
10 * This program is distributed in the hope that it will be useful,
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 * GNU General Public License for more details.
15 * You should have received a copy of the GNU General Public License
16 * along with this program; if not, write to the Free Software
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
20 package jalview.datamodel;
23 public class Annotation
25 public String displayCharacter="";
26 public String description=""; // currently used as mouse over
27 public char secondaryStructure=' '; // recognises H and E
30 // add visual cues here
31 public Color colour = Color.black;
33 public Annotation(String displayChar, String desc, char ss, float val)
35 displayCharacter = displayChar;
37 secondaryStructure = ss;
40 public Annotation(String displayChar, String desc, char ss, float val, Color colour) {
41 this(displayChar, desc, ss, val);