1 package jalview.datamodel;
3 import java.util.BitSet;
5 public interface ContactMatrixI
8 ContactListI getContactList(int column);
14 boolean hasReferenceSeq();
16 SequenceI getReferenceSeq();
18 String getAnnotDescr();
20 String getAnnotLabel();
23 * string indicating how the contactMatrix should be rendered - stored in calcId
31 default boolean hasGroups() {
34 default BitSet getGroupsFor(int column) {
35 BitSet colbitset = new BitSet();
36 colbitset.set(column);