2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
\r
3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
5 * This program is free software; you can redistribute it and/or
\r
6 * modify it under the terms of the GNU General Public License
\r
7 * as published by the Free Software Foundation; either version 2
\r
8 * of the License, or (at your option) any later version.
\r
10 * This program is distributed in the hope that it will be useful,
\r
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
\r
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
\r
13 * GNU General Public License for more details.
\r
15 * You should have received a copy of the GNU General Public License
\r
16 * along with this program; if not, write to the Free Software
\r
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
\r
19 package jalview.datamodel;
\r
22 * A set of feature property constants used by jalview
\r
27 public class FeatureProperties
\r
30 public static final String EXONPOS = "exon number";
\r
32 public static final String EXONPRODUCT = "product";
\r
35 * lookup feature type for a particular database to see if its a coding region
\r
38 * @param dbrefsource
\r
42 public static boolean isCodingFeature(String dbrefsource, String type)
\r
44 return ((dbrefsource == null
\r
45 || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL) || dbrefsource
\r
46 .equalsIgnoreCase(DBRefSource.EMBLCDS)) && type
\r
47 .equalsIgnoreCase("CDS"));
\r