2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.datamodel;
23 import java.awt.Color;
24 import java.util.BitSet;
25 import java.util.List;
27 public interface GroupSetI
35 void updateGroups(List<BitSet> colGroups);
37 BitSet getGroupsFor(int column);
39 Color getColourForGroup(BitSet bs);
41 void setColorForGroup(BitSet bs, Color color);
43 void restoreGroups(List<BitSet> newgroups, String treeMethod, String tree,
46 boolean hasCutHeight();
48 double getCutHeight();
50 String getTreeMethod();
52 List<BitSet> getGroups();