2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.datamodel;
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25 * @version $Revision$
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27 public class SequenceFeature
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36 * Creates a new SequenceFeature object.
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38 public SequenceFeature()
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43 * Creates a new SequenceFeature object.
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45 * @param type DOCUMENT ME!
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46 * @param start DOCUMENT ME!
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47 * @param end DOCUMENT ME!
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48 * @param description DOCUMENT ME!
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49 * @param status DOCUMENT ME!
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51 public SequenceFeature(String type, int start, int end, String description,
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57 this.description = description;
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58 this.status = status;
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64 * @return DOCUMENT ME!
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66 public int getStart()
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74 * @return DOCUMENT ME!
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84 * @return DOCUMENT ME!
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86 public String getType()
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94 * @return DOCUMENT ME!
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96 public String getDescription()
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104 * @return DOCUMENT ME!
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106 public String getStatus()
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112 <xs:enumeration value="active site" />
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113 <xs:enumeration value="binding site" />
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114 <xs:enumeration value="calcium-binding region" />
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115 <xs:enumeration value="chain" />
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116 <xs:enumeration value="cross-link" />
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117 <xs:enumeration value="disulfide bond" />
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118 <xs:enumeration value="DNA-binding region" />
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119 <xs:enumeration value="domain" />
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120 <xs:enumeration value="glycosylation site" />
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121 <xs:enumeration value="helix" />
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122 <xs:enumeration value="initiator methionine" />
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123 <xs:enumeration value="lipid moiety-binding region" />
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124 <xs:enumeration value="metal ion-binding site" />
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125 <xs:enumeration value="modified residue" />
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126 <xs:enumeration value="mutagenesis site" />
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127 <xs:enumeration value="non-consecutive residues" />
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128 <xs:enumeration value="non-terminal residue" />
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129 <xs:enumeration value="nucleotide phosphate-binding region" />
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130 <xs:enumeration value="peptide" />
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131 <xs:enumeration value="propeptide" />
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132 <xs:enumeration value="repeat" />
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133 <xs:enumeration value="selenocysteine" />
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134 <xs:enumeration value="sequence conflict" />
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135 <xs:enumeration value="sequence variant" />
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136 <xs:enumeration value="signal peptide" />
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137 <xs:enumeration value="similar" />
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138 <xs:enumeration value="site" />
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139 <xs:enumeration value="splice variant" />
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140 <xs:enumeration value="strand" />
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141 <xs:enumeration value="thioether bond" />
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142 <xs:enumeration value="thiolester bond" />
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143 <xs:enumeration value="transit peptide" />
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144 <xs:enumeration value="transmembrane region" />
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145 <xs:enumeration value="turn" />
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146 <xs:enumeration value="unsure residue" />
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147 <xs:enumeration value="zinc finger region" />
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