2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.datamodel;
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25 * @version $Revision$
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27 public class SequenceFeature
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33 public String description;
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34 public String status;
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35 public java.util.Vector links;
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37 // Feature group can be set from a features file
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38 // as a group of features between STARTGROUP and ENDGROUP markers
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39 public String featureGroup;
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41 public SequenceFeature()
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44 public SequenceFeature(String type,
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48 String featureGroup)
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51 this.description = desc;
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52 this.status = status;
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55 this.featureGroup = featureGroup;
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57 public SequenceFeature(String type,
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61 String featureGroup)
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64 this.description = desc;
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65 this.status = status;
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69 this.featureGroup = featureGroup;
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72 public boolean equals(SequenceFeature sf)
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74 if(begin != sf.begin
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79 if(!(type+description+status).equals
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80 (sf.type+sf.description+sf.status))
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90 * @return DOCUMENT ME!
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92 public int getBegin()
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97 public void setBegin(int start)
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105 * @return DOCUMENT ME!
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107 public int getEnd()
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112 public void setEnd(int end)
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120 * @return DOCUMENT ME!
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122 public String getType()
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127 public void setType(String type)
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135 * @return DOCUMENT ME!
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137 public String getDescription()
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139 return description;
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142 public void setDescription(String desc)
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144 description = desc;
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150 * @return DOCUMENT ME!
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152 public String getStatus()
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157 public void setStatus(String status)
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159 this.status = status;
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162 public String getFeatureGroup()
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164 return featureGroup;
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167 public void setFeatureGroup(String featureGroup)
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169 this.featureGroup = featureGroup;
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172 public void addLink(String labelLink)
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175 links = new java.util.Vector();
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177 links.insertElementAt(labelLink,0);
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180 public float getScore()
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185 public void setScore(float value)
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