1 package jalview.ext.archaeopteryx;
3 import jalview.math.MatrixI;
5 import org.forester.evoinference.matrix.distance.DistanceMatrix;
7 public class ForesterMatrix implements DistanceMatrix
9 private MatrixI jalviewMatrix;
11 public ForesterMatrix(MatrixI jalviewInputMatrix)
13 this.jalviewMatrix = jalviewInputMatrix;
18 public String getIdentifier(int i)
20 // TODO Auto-generated method stub
25 public int getIndex(String identifier)
37 public double getValue(int col, int row)
39 return jalviewMatrix.getValue(row, col);
43 public void setIdentifier(int i, String identifier)
45 // TODO Auto-generated method stub
50 public void setValue(int col, int row, double distance)
52 jalviewMatrix.setValue(row, col, distance);
57 public StringBuffer toStringBuffer(Format format)
59 // TODO Auto-generated method stub
64 public double[][] getValues()
66 // TODO Auto-generated method stub