src/jalview/ext/archaeopteryx/JalviewAptxBinding.java

   1 package jalview.ext.archaeopteryx;
   2
   3 import jalview.datamodel.ColumnSelection;
   4 import jalview.datamodel.HiddenColumns;
   5 import jalview.datamodel.SequenceGroup;
   6 import jalview.datamodel.SequenceI;
   7 import jalview.structure.SelectionSource;
   8 import jalview.structure.StructureSelectionManager;
   9 import jalview.viewmodel.AlignmentViewport;
  10
  11 import java.awt.event.ActionEvent;
  12 import java.awt.event.InputEvent;
  13 import java.awt.event.MouseEvent;
  14 import java.util.HashSet;
  15 import java.util.Map;
  16
  17 import org.forester.archaeopteryx.MainFrame;
  18 import org.forester.phylogeny.PhylogenyNode;
  19
  20 public class JalviewAptxBinding implements JalviewTreeViewerBindingI
  21 {
  22   org.forester.archaeopteryx.TreePanel treeView;
  23
  24   AlignmentViewport parentAvport;
  25
  26   StructureSelectionManager ssm;
  27
  28   Map<SequenceI, PhylogenyNode> sequencesBelongingToNodes;
  29
  30
  31   public JalviewAptxBinding(MainFrame archaeopteryx,
  32           AlignmentViewport jalviewAlignmentViewport,
  33           Map<SequenceI, PhylogenyNode> alignMappedToNodes)
  34   {
  35     parentAvport = jalviewAlignmentViewport;
  36     sequencesBelongingToNodes = alignMappedToNodes;
  37     treeView = archaeopteryx.getMainPanel().getCurrentTreePanel();
  38     ssm = parentAvport.getStructureSelectionManager();
  39     ssm.addSelectionListener(this);
  40     treeView.addMouseListener(this);
  41   }
  42
  43   @Override
  44   public void actionPerformed(ActionEvent e)
  45   {
  46
  47   }
  48
  49   @Override
  50   public void mouseClicked(MouseEvent e)
  51   {
  52
  53   }
  54
  55   @Override
  56   public void mousePressed(MouseEvent e)
  57   {
  58     showNodeSelectionOnAlign(e);
  59
  60   }
  61
  62   @Override
  63   public void mouseReleased(MouseEvent e)
  64   {
  65   }
  66
  67   @Override
  68   public void mouseEntered(MouseEvent e)
  69   {
  70
  71   }
  72
  73   @Override
  74   public void mouseExited(MouseEvent e)
  75   {
  76
  77   }
  78
  79   @Override
  80   public void selection(SequenceGroup seqsel, ColumnSelection colsel,
  81           HiddenColumns hidden, SelectionSource source)
  82   {
  83     if (source == parentAvport) // check if source is alignment from where the
  84                                 // tree originates
  85     {
  86       treeView.setFoundNodes0(
  87               new HashSet<Long>(seqsel.getSequences().size()));
  88
  89       for (SequenceI sequence : seqsel.getSequences())
  90       {
  91         PhylogenyNode matchingNode = sequencesBelongingToNodes.get(sequence);
  92         treeView.getFoundNodes0().add(matchingNode.getId());
  93
  94       }
  95       treeView.repaint();
  96
  97     }
  98
  99
 100   }
 101
 102   @Override
 103   public void showNodeSelectionOnAlign(MouseEvent e)
 104   {
 105     final PhylogenyNode node = treeView.findNode(e.getX(), e.getY());
 106     if (node != null && node.isExternal())
 107     {
 108
 109       if ((e.getModifiers() & InputEvent.SHIFT_MASK) != 0) // shift is pressed
 110       // (so multiple nodes
 111       // can be selected)
 112       {
 113
 114         System.out.println(treeView.getFoundNodes0().toString());
 115       }
 116     }
 117
 118   }
 119
 120
 121
 122
 123   }
 124
 125
 126