2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ext.ensembl;
24 * Selected species identifiers used by Ensembl
27 * @see http://rest.ensembl.org/info/species?content-type=text/xml
32 * using any suitably readable alias as the enum name; these are all
33 * valid species parameters to Ensembl REST services where applicable
35 human(true), mouse(true), s_cerevisiae(true), cow(false), pig(false),
36 rat(true), celegans(true), sheep(false), horse(false), gorilla(false),
37 rabbit(false), gibbon(false), dog(false), orangutan(false),
38 xenopus(true), chimpanzee(false), cat(false), zebrafish(true), chicken(
39 true), dmelanogaster(true);
41 boolean modelOrganism;
43 private Species(boolean model)
45 this.modelOrganism = model;
48 boolean isModelOrganism()