1 package jalview.ext.forester.io;
3 import jalview.datamodel.SequenceI;
4 import jalview.ext.treeviewer.TreeI;
5 import jalview.ext.treeviewer.TreeParserI;
6 import jalview.io.AlignFile;
7 import jalview.io.FileParse;
10 import java.io.IOException;
12 public class PhyloXmlFile extends AlignFile
15 public PhyloXmlFile(FileParse source) throws IOException
21 public String print(SequenceI[] seqs, boolean jvsuffix)
23 // TODO Auto-generated method stub
28 public void parse() throws IOException
30 TreeParserI parser = ForesterParser
31 .createPhyloXmlParser(new File(getDataName()));
32 TreeI[] trees = parser.parse();
33 for (SequenceI seq : trees[0].getNodeSequences())