src/jalview/ext/treeviewer/TreeI.java

   1 package jalview.ext.treeviewer;
   2
   3 import jalview.datamodel.SequenceI;
   4
   5 import java.io.File;
   6 import java.io.IOException;
   7 import java.util.Iterator;
   8 import java.util.List;
   9
  10 public interface TreeI
  11 {
  12   public TreeNodeI getRoot();
  13
  14   public TreeNodeI getNodeWithName(String name);
  15
  16   public TreeNodeI getFurthestNode();
  17
  18   public TreeNodeI[] getAllNodes();
  19
  20   public String[] getAllLeafNames();
  21
  22   public List<SequenceI> getNodeSequences();
  23
  24   public void setTreeName(String treeTitle);
  25
  26   public void setRerootable(boolean b);
  27
  28   public void setRooted(boolean b);
  29
  30   public boolean isEmpty();
  31
  32   public String getTreeName();
  33
  34   public void setRoot(TreeNodeI rootNode);
  35
  36   public double getHeight(boolean adjustForCollapsedSubtrees);
  37
  38   public Iterator<TreeNodeI> iterateInPreOrder();
  39
  40   public Iterator<TreeNodeI> iterateInLevelOrder();
  41
  42   public Iterator<TreeNodeI> iterateInPostOrder();
  43
  44   TreeFrameI createTreeViewerFromTree(String instanceTitle);
  45
  46   public void writeToXml(File outputFile) throws IOException;
  47
  48 }