2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
22 package jalview.fts.core;
24 import jalview.datamodel.SequenceI;
25 import jalview.fts.api.FTSData;
26 import jalview.fts.api.FTSDataColumnI;
28 import java.util.Collection;
31 import javax.swing.JTable;
32 import javax.swing.table.DefaultTableModel;
35 * Represents the response model generated by the FTSRestClient upon successful
36 * execution of a given FTS request
41 public class FTSRestResponse
43 private int numberOfItemsFound;
45 private Long sequenceLength;
47 private String responseTime;
49 private Collection<FTSData> searchSummary;
51 public int getNumberOfItemsFound()
53 return numberOfItemsFound;
56 public void setNumberOfItemsFound(int itemFound)
58 this.numberOfItemsFound = itemFound;
61 public String getResponseTime()
66 public void setResponseTime(String responseTime)
68 this.responseTime = responseTime;
71 public Collection<FTSData> getSearchSummary()
76 public void setSearchSummary(Collection<FTSData> searchSummary)
78 this.searchSummary = searchSummary;
81 public long getSequenceLength() {
82 return sequenceLength;
85 public void setSequenceLength(Long seqLength) {
86 this.sequenceLength = seqLength;
90 * Convenience method to obtain a Table model for a given summary List based
91 * on the request parameters
94 * the FTSRestRequest object which holds useful information for
95 * creating a table model
96 * @param summariesList
97 * the summary list which contains the data for populating the
99 * @return the table model which was dynamically generated
101 public static DefaultTableModel getTableModel(FTSRestRequest request,
102 Collection<FTSData> summariesList)
104 final FTSDataColumnI[] cols = request.getWantedFields()
105 .toArray(new FTSDataColumnI[0]);
106 final int colOffset = request.getAssociatedSequence() == null ? 0 : 1;
107 DefaultTableModel tableModel = new DefaultTableModel()
110 public boolean isCellEditable(int row, int column)
116 public Class<?> getColumnClass(int columnIndex)
118 if (colOffset == 1 && columnIndex == 0)
120 return SequenceI.class;
122 return cols[columnIndex - colOffset].getDataType()
127 if (request.getAssociatedSequence() != null)
129 tableModel.addColumn("Ref Sequence"); // Create sequence column header if
130 // exists in the request
132 for (FTSDataColumnI field : request.getWantedFields())
134 tableModel.addColumn(field.getName()); // Create sequence column header if
135 // exists in the request
138 for (FTSData res : summariesList)
140 tableModel.addRow(res.getSummaryData()); // Populate table rows with
147 public static void configureTableColumn(JTable tbl_summary,
148 Collection<FTSDataColumnI> wantedFields,
149 Map<String, Integer> columnPrefs)
151 for (FTSDataColumnI wantedField : wantedFields)
155 tbl_summary.getColumn(wantedField.getName())
156 .setMinWidth(wantedField.getMinWidth());
157 tbl_summary.getColumn(wantedField.getName())
158 .setMaxWidth(wantedField.getMaxWidth());
159 int prefedWidth = columnPrefs.get(wantedField.getName()) == null
160 ? wantedField.getPreferredWidth()
161 : columnPrefs.get(wantedField.getName());
162 tbl_summary.getColumn(wantedField.getName())
163 .setPreferredWidth(prefedWidth);
164 } catch (Exception e)
168 if (wantedField.getDataType().getDataTypeClass() == Double.class)
170 DecimalFormatTableCellRenderer dfr = new DecimalFormatTableCellRenderer(
171 wantedField.getDataType().isFormtted(),
172 wantedField.getDataType().getSignificantFigures());
173 tbl_summary.getColumn(wantedField.getName()).setCellRenderer(dfr);
175 else if (wantedField.getDataType()
176 .getDataTypeClass() == Integer.class)
178 DecimalFormatTableCellRenderer dfr = new DecimalFormatTableCellRenderer(
179 wantedField.getDataType().isFormtted(),
180 wantedField.getDataType().getSignificantFigures());
181 tbl_summary.getColumn(wantedField.getName()).setCellRenderer(dfr);