1 /********************
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2 * 2004 Jalview Reengineered
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12 package jalview.gui;
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14 import jalview.jbgui.GAlignFrame;
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15 import jalview.schemes.*;
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16 import jalview.datamodel.*;
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17 import jalview.analysis.*;
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18 import jalview.io.*;
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19 import jalview.ws.*;
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21 import java.awt.event.*;
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22 import java.awt.print.*;
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23 import javax.swing.*;
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24 import javax.swing.event.*;
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26 import jalview.datamodel.SequenceI;
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28 public class AlignFrame extends GAlignFrame
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30 final AlignmentPanel alignPanel;
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31 final AlignViewport viewport;
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32 public AlignFrame(AlignmentI al)
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36 AlignmentUtil.addUniprotFeatures(al);
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38 viewport = new AlignViewport(al,true,true,true,false);
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39 alignPanel = new AlignmentPanel(this, viewport);
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40 getContentPane().add(alignPanel, java.awt.BorderLayout.CENTER);
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41 fontNameMenuItem.setText(viewport.getFont().getName());
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42 fontSizeMenuItem.setText(viewport.getFont().getSize()+"");
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45 protected void saveAs_actionPerformed(ActionEvent e)
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47 JFileChooser chooser = new JFileChooser(jalview.bin.Cache.LAST_DIRECTORY);
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48 chooser.setDialogTitle("Save Alignment to file - "+e.getActionCommand() +" format.");
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49 chooser.setToolTipText("Save");
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50 int value = chooser.showSaveDialog(this);
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51 if(value == JFileChooser.APPROVE_OPTION)
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53 String choice = chooser.getSelectedFile().getPath();
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54 jalview.bin.Cache.LAST_DIRECTORY = choice;
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55 String output = FormatAdapter.get(e.getActionCommand(), viewport.getAlignment().getSequences());
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57 java.io.PrintWriter out = new java.io.PrintWriter( new java.io.FileWriter( choice ) );
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58 out.println(output);
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61 catch(Exception ex){}
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66 protected void outputText_actionPerformed(ActionEvent e)
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68 CutAndPasteTransfer cap = new CutAndPasteTransfer(false);
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69 JInternalFrame frame = new JInternalFrame();
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70 cap.formatForOutput();
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71 frame.setContentPane(cap);
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72 Desktop.addInternalFrame(frame, "Alignment output - "+e.getActionCommand(), 600, 500);
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73 cap.setText( FormatAdapter.get(e.getActionCommand(), viewport.getAlignment().getSequences()));
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76 protected void htmlMenuItem_actionPerformed(ActionEvent e)
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78 HTMLOutput htmlOutput = new HTMLOutput(viewport);
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82 public void printMenuItem_actionPerformed(ActionEvent e)
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84 //Putting in a thread avoids Swing painting problems
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85 PrintThread thread = new PrintThread();
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89 class PrintThread extends Thread
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93 PrinterJob printJob = PrinterJob.getPrinterJob();
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94 PageFormat pf = printJob.pageDialog(printJob.defaultPage());
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95 printJob.setPrintable(alignPanel, pf);
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96 if (printJob.printDialog())
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102 catch (Exception PrintException)
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104 PrintException.printStackTrace();
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114 public void closeMenuItem_actionPerformed(ActionEvent e)
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117 this.setClosed(true);
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118 }catch(Exception ex){}
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121 ArrayList historyList = new ArrayList();
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122 ArrayList redoList = new ArrayList();
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124 void updateEditMenuBar()
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126 if(historyList.size()>0)
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128 undoMenuItem.setEnabled(true);
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129 Object [] history = (Object[])historyList.get(0);
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130 undoMenuItem.setText("Undo "+history[0]);
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134 undoMenuItem.setEnabled(false);
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135 undoMenuItem.setText("Undo");
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138 if(redoList.size()>0)
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140 redoMenuItem.setEnabled(true);
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141 Object [] history = (Object[])redoList.get(0);
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142 redoMenuItem.setText("Redo "+history[0]);
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146 redoMenuItem.setEnabled(false);
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147 redoMenuItem.setText("Redo");
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151 public void addHistoryItem(String type)
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153 // must make sure we add new sequence objects her, not refs to the existing sequences
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155 SequenceI[] seq = new SequenceI[viewport.getAlignment().getHeight()];
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156 for(int i=0; i<viewport.getAlignment().getHeight(); i++)
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158 seq[i] = new Sequence( viewport.getAlignment().getSequenceAt(i).getName(),
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159 viewport.getAlignment().getSequenceAt(i).getSequence());
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162 historyList.add(0, new Object[]{type, seq} );
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163 updateEditMenuBar();
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166 protected void undoMenuItem_actionPerformed(ActionEvent e)
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168 Object [] history = (Object[])historyList.remove(0);
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169 // add the redo state before continuing!!
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170 SequenceI[] seq = new SequenceI[viewport.getAlignment().getHeight()];
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171 for (int i = 0; i < viewport.getAlignment().getHeight(); i++)
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173 seq[i] = new Sequence(viewport.getAlignment().getSequenceAt(i).getName(),
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174 viewport.getAlignment().getSequenceAt(i).
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179 redoList.add(0, new Object[] {history[0], seq});
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181 seq = (SequenceI[]) history[1];
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182 viewport.setAlignment( new Alignment(seq) );
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183 updateEditMenuBar();
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184 alignPanel.RefreshPanels();
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188 protected void redoMenuItem_actionPerformed(ActionEvent e)
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190 Object [] history = (Object[])redoList.remove(0);
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191 SequenceI[] seq = (SequenceI[]) history[1];
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192 viewport.setAlignment( new Alignment(seq) );
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193 updateEditMenuBar();
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194 alignPanel.RefreshPanels();
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198 public void groupsMenuItem_actionPerformed(ActionEvent e)
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200 GroupEditor geditor = new GroupEditor(viewport, alignPanel);
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201 JInternalFrame frame = new JInternalFrame();
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202 frame.setContentPane(geditor);
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203 Desktop.addInternalFrame(frame, "Group editor", 710, 410);
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204 frame.setResizable(false);
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207 protected void deleteGroups_actionPerformed(ActionEvent e)
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209 viewport.alignment.deleteAllGroups();
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210 viewport.getSelection().clear();
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212 alignPanel.RefreshPanels();
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217 public void selectAllSequenceMenuItem_actionPerformed(ActionEvent e)
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219 Selection sel = viewport.getSelection();
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220 for (int i=0; i<viewport.getAlignment().getSequences().size(); i++)
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221 sel.addElement( viewport.getAlignment().getSequenceAt(i));
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222 PaintRefresher.Refresh(null);
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225 public void deselectAllSequenceMenuItem_actionPerformed(ActionEvent e)
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227 viewport.setRubberbandGroup(null);
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228 viewport.getSelection().clear();
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229 PaintRefresher.Refresh(null);
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232 public void invertSequenceMenuItem_actionPerformed(ActionEvent e)
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234 Selection sel = viewport.getSelection();
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235 for (int i=0; i<viewport.getAlignment().getSequences().size(); i++)
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237 if (sel.contains(viewport.getAlignment().getSequenceAt(i)))
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238 sel.removeElement(viewport.getAlignment().getSequenceAt(i));
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240 sel.addElement(viewport.getAlignment().getSequenceAt(i));
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242 PaintRefresher.Refresh(null);
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246 public void deselectAllColumnsMenuItem_actionPerformed(ActionEvent e)
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248 viewport.getColumnSelection().clear();
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252 public void remove2LeftMenuItem_actionPerformed(ActionEvent e)
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254 addHistoryItem("delete columns");
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255 ColumnSelection colSel = viewport.getColumnSelection();
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256 if (colSel.size() > 0)
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258 int min = colSel.getMin();
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259 viewport.getAlignment().trimLeft(min);
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260 colSel.compensateForEdit(0,min);
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261 alignPanel.RefreshPanels();
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265 public void remove2RightMenuItem_actionPerformed(ActionEvent e)
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267 addHistoryItem("delete columns");
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268 ColumnSelection colSel = viewport.getColumnSelection();
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269 if (colSel.size() > 0)
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271 int max = colSel.getMax();
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273 viewport.getAlignment().trimRight(max);
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275 alignPanel.RefreshPanels();
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280 public void removeGappedColumnMenuItem_actionPerformed(ActionEvent e)
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282 addHistoryItem("delete gapped columns");
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283 viewport.getAlignment().removeGaps();
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284 alignPanel.RefreshPanels();
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287 public void removeAllGapsMenuItem_actionPerformed(ActionEvent e)
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289 addHistoryItem("delete all gaps");
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292 for (int i=0; i < viewport.getAlignment().getSequences().size();i++)
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294 current = viewport.getAlignment().getSequenceAt(i);
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295 jSize = current.getLength();
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296 for (int j=0; j < jSize; j++)
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297 if(jalview.util.Comparison.isGap(current.getCharAt(j)))
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299 current.deleteCharAt(j);
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305 alignPanel.RefreshPanels();
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308 public void setGapCharMenuItem_actionPerformed(ActionEvent e)
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310 char thisChar = '-';
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311 char nextChar = '.';
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312 if(viewport.getGapCharacter()=='-')
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317 setGapCharMenuItem.setText("Set gap character to \""+nextChar+"\"");
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318 viewport.setGapCharacter(thisChar);
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319 alignPanel.RefreshPanels();
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322 public void findMenuItem_actionPerformed(ActionEvent e)
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324 JOptionPane op = new JOptionPane();
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325 JInternalFrame frame = op.createInternalFrame(this, "Find");
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326 Finder finder = new Finder(viewport, alignPanel, frame);
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327 frame.setClosable(true);
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328 frame.setContentPane(finder);
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329 frame.setSize(340,110);
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330 frame.setVisible(true);
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335 public void fontNameMenuItem_actionPerformed(ActionEvent e)
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337 String fonts[] = java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment().getAvailableFontFamilyNames();
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340 String selection = JOptionPane.showInternalInputDialog(this,
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343 JOptionPane.QUESTION_MESSAGE,
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345 ,fontNameMenuItem.getText()).toString();
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346 if(selection!=null)
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348 fontNameMenuItem.setText(selection);
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354 public void fontSizeMenuItem_actionPerformed(ActionEvent e)
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356 String selection = JOptionPane.showInternalInputDialog(this,
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357 "Select font size",
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359 JOptionPane.QUESTION_MESSAGE,
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360 null, new String[]{"1","2","4","6","8","10","12","14","16","18","20"}
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361 ,fontSizeMenuItem.getText()).toString();
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362 if(selection!=null)
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364 fontSizeMenuItem.setText(selection);
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369 public void fontStyleMenuItem_actionPerformed(ActionEvent e)
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371 String selection = JOptionPane.showInternalInputDialog(this,
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372 "Select font style",
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374 JOptionPane.QUESTION_MESSAGE,
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375 null, new String[]{"plain", "bold", "italic"}
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376 ,fontStyleMenuItem.getText()).toString();
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377 if(selection!=null)
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379 fontStyleMenuItem.setText(selection);
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385 protected void colourTextMenuItem_actionPerformed(ActionEvent e)
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387 viewport.setColourText( colourTextMenuItem.isSelected() );
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388 alignPanel.RefreshPanels();
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393 int style = java.awt.Font.PLAIN;
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394 if(fontStyleMenuItem.getText().equals("bold"))
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395 style = java.awt.Font.BOLD;
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396 else if(fontStyleMenuItem.getText().equals("italic"))
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397 style = java.awt.Font.ITALIC;
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399 viewport.setFont(new java.awt.Font(fontNameMenuItem.getText(),
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401 Integer.parseInt(fontSizeMenuItem.getText())));
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402 alignPanel.RefreshPanels();
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406 protected void wrapMenuItem_actionPerformed(ActionEvent e)
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408 viewport.setWrapAlignment( wrapMenuItem.isSelected() );
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409 alignPanel.setWrapAlignment( wrapMenuItem.isSelected() );
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413 public void viewBoxesMenuItem_actionPerformed(ActionEvent e)
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415 viewport.setShowBoxes( viewBoxesMenuItem.isSelected() );
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416 alignPanel.RefreshPanels();
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419 public void viewTextMenuItem_actionPerformed(ActionEvent e)
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421 viewport.setShowText( viewTextMenuItem.isSelected() );
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422 alignPanel.RefreshPanels();
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426 protected void renderGapsMenuItem_actionPerformed(ActionEvent e)
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428 viewport.setRenderGaps(renderGapsMenuItem.isSelected());
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429 alignPanel.RefreshPanels();
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432 public void sequenceFeatures_actionPerformed(ActionEvent evt)
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434 viewport.showSequenceFeatures(sequenceFeatures.isSelected());
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435 alignPanel.RefreshPanels();
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438 public void consensusGraphMenuItem_actionPerformed(ActionEvent e)
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440 alignPanel.setGraphPanelVisible( consensusGraphMenuItem.isSelected() );
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443 public void overviewMenuItem_actionPerformed(ActionEvent e)
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445 if (alignPanel.overviewPanel != null)
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448 JInternalFrame frame = new JInternalFrame();
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449 OverviewPanel overview = alignPanel.getOverviewPanel();
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451 overview = new OverviewPanel(alignPanel, viewport);
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452 frame.setContentPane(overview);
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453 Desktop.addInternalFrame(frame, "Overview " + this.getTitle(),
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454 frame.getWidth(), frame.getHeight());
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456 frame.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
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457 { public void internalFrameClosed(javax.swing.event.InternalFrameEvent evt)
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459 alignPanel.setOverviewPanel(null);
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462 alignPanel.setOverviewPanel( overview );
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464 }catch(java.lang.OutOfMemoryError ex)
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466 JOptionPane.showInternalMessageDialog(this, "Sequence alignment too large to\nproduce overview image!!"
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467 +"\nTry reducing the font size.",
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468 "Out of memory", JOptionPane.WARNING_MESSAGE);
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474 protected void noColourmenuItem_actionPerformed(ActionEvent e)
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476 viewport.setGlobalColourScheme( null );
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481 public void clustalColour_actionPerformed(ActionEvent e)
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483 viewport.setGlobalColourScheme(
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484 new ClustalxColourScheme(viewport.alignment.getSequences(), viewport.alignment.getWidth()));
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485 abovePIDThreshold.setSelected(false);
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489 public void zappoColour_actionPerformed(ActionEvent e)
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491 viewport.setGlobalColourScheme(new ZappoColourScheme() );
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495 public void taylorColour_actionPerformed(ActionEvent e)
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497 viewport.setGlobalColourScheme(new TaylorColourScheme() );
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502 public void hydrophobicityColour_actionPerformed(ActionEvent e)
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504 viewport.setGlobalColourScheme( new HydrophobicColourScheme() );
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508 public void helixColour_actionPerformed(ActionEvent e)
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510 viewport.setGlobalColourScheme( new HelixColourScheme() );
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515 public void strandColour_actionPerformed(ActionEvent e)
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517 viewport.setGlobalColourScheme(new StrandColourScheme() );
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522 public void turnColour_actionPerformed(ActionEvent e)
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524 viewport.setGlobalColourScheme(new TurnColourScheme() );
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529 public void buriedColour_actionPerformed(ActionEvent e)
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531 viewport.setGlobalColourScheme( new BuriedColourScheme() );
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535 public void nucleotideColour_actionPerformed(ActionEvent e)
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537 viewport.setGlobalColourScheme( new NucleotideColourScheme() );
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542 void changeColour()
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544 if(abovePIDThreshold.isSelected())
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545 abovePIDThreshold_actionPerformed(null);
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546 else if(conservationMenuItem.isSelected())
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547 conservationMenuItem_actionPerformed(null);
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549 alignPanel.RefreshPanels();
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553 protected void conservationMenuItem_actionPerformed(ActionEvent e)
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555 if(abovePIDThreshold.isSelected())
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557 abovePIDThreshold.setSelected(false);
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558 Desktop.hidePIDSlider();
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561 viewport.setConservationSelected(conservationMenuItem.isSelected());
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563 ColourSchemeI oldCs = viewport.getGlobalColourScheme();
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565 ConservationColourScheme ccs = null;
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566 if (oldCs instanceof ConservationColourScheme)
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567 ccs = (ConservationColourScheme) oldCs;
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569 if (conservationMenuItem.isSelected())
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571 Alignment al = (Alignment) viewport.alignment;
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572 Conservation c = new Conservation("All",
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573 ResidueProperties.propHash, 3,
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574 al.getSequences(), 0,
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578 c.verdict(false, 100);
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581 ccs = new ConservationColourScheme(c, ccs.cs);
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583 ccs = new ConservationColourScheme(c, oldCs);
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586 int threshold = Desktop.setConservationSliderSource(alignPanel, ccs, "Background");
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588 ccs.inc = threshold;
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590 if (ccs.cs instanceof ResidueColourScheme)
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591 ((ResidueColourScheme) ccs.cs).setThreshold(0);
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592 else if (ccs.cs instanceof ScoreColourScheme)
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593 ((ScoreColourScheme)ccs.cs).setThreshold(0);
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595 viewport.setGlobalColourScheme(ccs);
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599 else if (oldCs instanceof ConservationColourScheme)
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601 /// ie, if we remove ConservationColourScheme from backgroundColour
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603 viewport.setGlobalColourScheme(oldCs);
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604 Desktop.hideConservationSlider();
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608 alignPanel.RefreshPanels();
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612 public void abovePIDThreshold_actionPerformed(ActionEvent e)
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614 if(conservationMenuItem.isSelected())
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615 conservationMenuItem.setSelected(false);
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617 ColourSchemeI oldCs = viewport.getGlobalColourScheme();
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619 if (oldCs instanceof ConservationColourScheme)
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621 ConservationColourScheme ccs = (ConservationColourScheme) oldCs;
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625 if(abovePIDThreshold.isSelected())
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627 threshold = Desktop.setPIDSliderSource(alignPanel, oldCs, "Background");
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628 Desktop.hideConservationSlider();
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631 Desktop.hidePIDSlider();
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633 if (oldCs instanceof ResidueColourScheme)
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634 ((ResidueColourScheme) oldCs).setThreshold(threshold);
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635 else if (oldCs instanceof ScoreColourScheme)
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636 ((ScoreColourScheme)oldCs).setThreshold(threshold);
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638 viewport.setGlobalColourScheme(oldCs);
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640 alignPanel.RefreshPanels();
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645 public void userDefinedColour_actionPerformed(ActionEvent e)
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647 JInternalFrame frame = new JInternalFrame();
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648 UserDefinedColours chooser = new UserDefinedColours( frame, alignPanel, null);
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649 frame.setContentPane(chooser);
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650 Desktop.addInternalFrame(frame,"User defined colours", 450,540 );
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651 frame.setResizable(false);
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652 frame.setIconifiable(false);
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653 frame.setMaximizable(false);
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656 public void PIDColour_actionPerformed(ActionEvent e)
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658 viewport.setGlobalColourScheme( new PIDColourScheme() );
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659 alignPanel.setColourScheme( );
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663 public void BLOSUM62Colour_actionPerformed(ActionEvent e)
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665 viewport.setGlobalColourScheme( new Blosum62ColourScheme(viewport) );
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671 public void sortPairwiseMenuItem_actionPerformed(ActionEvent e)
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673 addHistoryItem("sort");
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674 AlignmentSorter.sortByPID(viewport.getAlignment(), viewport.getAlignment().getSequenceAt(0));
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675 alignPanel.RefreshPanels();
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678 public void sortIDMenuItem_actionPerformed(ActionEvent e)
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680 addHistoryItem("sort");
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681 AlignmentSorter.sortByID( viewport.getAlignment() );
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682 alignPanel.RefreshPanels();
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685 public void sortGroupMenuItem_actionPerformed(ActionEvent e)
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687 addHistoryItem("sort");
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688 AlignmentSorter.sortByGroup(viewport.getAlignment());
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689 AlignmentSorter.sortGroups(viewport.getAlignment());
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690 alignPanel.RefreshPanels();
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693 public void sortTreeOrderMenuItem_actionPerformed(ActionEvent e)
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695 addHistoryItem("sort");
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696 if(viewport.getCurrentTree()==null)
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699 AlignmentSorter.sortByTree(viewport.getAlignment(), viewport.getCurrentTree());
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700 alignPanel.RefreshPanels();
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703 public void removeRedundancyMenuItem_actionPerformed(ActionEvent e)
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705 RedundancyPanel sp = new RedundancyPanel(alignPanel);
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706 JInternalFrame frame = new JInternalFrame();
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707 frame.setContentPane(sp);
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708 Desktop.addInternalFrame(frame, "Redundancy threshold selection", 400, 100);
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709 frame.setMaximizable(false);
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710 frame.setResizable(false);
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714 public void pairwiseAlignmentMenuItem_actionPerformed(ActionEvent e)
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716 if(viewport.getSelection().size()<2)
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717 JOptionPane.showInternalMessageDialog(this, "You must select at least 2 sequences.", "Invalid Selection", JOptionPane.WARNING_MESSAGE);
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720 JInternalFrame frame = new JInternalFrame();
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721 frame.setContentPane(new PairwiseAlignPanel(viewport));
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722 Desktop.addInternalFrame(frame, "Pairwise Alignment", 600, 500);
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726 public void PCAMenuItem_actionPerformed(ActionEvent e)
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728 if( (viewport.getSelection().size()<4 && viewport.getSelection().size()>0)
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729 || viewport.getAlignment().getHeight()<4)
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731 JOptionPane.showInternalMessageDialog(this, "Principal component analysis must take\n"
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732 +"at least 4 input sequences.",
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733 "Sequence selection insufficient",
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734 JOptionPane.WARNING_MESSAGE);
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739 PCAPanel pcaPanel = new PCAPanel(viewport, null);
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740 JInternalFrame frame = new JInternalFrame();
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741 frame.setContentPane(pcaPanel);
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742 Desktop.addInternalFrame(frame, "Principal component analysis", 400, 400);
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743 }catch(java.lang.OutOfMemoryError ex)
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745 JOptionPane.showInternalMessageDialog(this, "Too many sequences selected\nfor Principal Component Analysis!!",
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746 "Out of memory", JOptionPane.WARNING_MESSAGE);
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752 public void averageDistanceTreeMenuItem_actionPerformed(ActionEvent e)
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754 NewTreePanel("AV", "PID", "Average distance tree using PID");
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757 public void neighbourTreeMenuItem_actionPerformed(ActionEvent e)
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759 NewTreePanel("NJ", "PID", "Neighbour joining tree using PID");
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763 protected void njTreeBlosumMenuItem_actionPerformed(ActionEvent e)
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765 NewTreePanel("NJ", "BL", "Neighbour joining tree using BLOSUM62");
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768 protected void avTreeBlosumMenuItem_actionPerformed(ActionEvent e)
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770 NewTreePanel("AV", "BL", "Average distance tree using BLOSUM62PID");
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773 void NewTreePanel(String type, String pwType, String title)
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775 JInternalFrame frame = new javax.swing.JInternalFrame();
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777 if (viewport.getSelection() != null && viewport.getSelection().size() > 3)
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779 tp = new TreePanel(viewport, viewport.getSelection().asVector(),type, pwType,
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780 viewport.getStartRes(), viewport.getEndRes());
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784 tp = new TreePanel(viewport, viewport.getAlignment().getSequences(),
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785 type, pwType, viewport.getStartRes(),
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786 viewport.getEndRes());
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789 frame.setContentPane(tp);
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790 Desktop.addInternalFrame(frame, title, 600, 500);
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796 public void clustalAlignMenuItem_actionPerformed(ActionEvent e)
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798 JInternalFrame frame = new JInternalFrame();
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799 ClustalThread ct = new ClustalThread(frame);
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800 Thread t = new Thread(ct);
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802 frame.setContentPane(ct);
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803 Desktop.addInternalFrame(frame, title, 300, 80);
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807 class ClustalThread extends JPanel implements Runnable
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810 int imageIndex = 0;
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811 boolean webServiceRunning = false;
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812 JInternalFrame frame;
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813 public ClustalThread(JInternalFrame frame)
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815 this.frame = frame;
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816 image = new Image[9];
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817 for(int i=0; i<9; i++)
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819 java.net.URL url = getClass().getResource("/dna" + (i+1) + ".gif");
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822 image[i] = java.awt.Toolkit.getDefaultToolkit().createImage(url);
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823 MediaTracker mt = new MediaTracker(this);
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824 mt.addImage(image[i], i);
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825 try{mt.waitForID(i);}
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826 catch(Exception ex){}
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829 DNATwirler twirler = new DNATwirler();
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831 webServiceRunning = true;
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834 class DNATwirler extends Thread
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838 while(webServiceRunning)
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846 catch(Exception ex){}
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852 // Should check to see if the server settings are valid
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853 // Need visual-delay indication here.
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856 jalview.ws.Jemboss jemboss = new jalview.ws.Jemboss();
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857 Vector sv = viewport.getAlignment().getSequences();
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858 SequenceI[] seqs = new SequenceI[sv.size()];
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863 seqs[i] = (SequenceI) sv.elementAt(i);
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865 while (++i < sv.size());
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867 SequenceI[] alignment = jemboss.clustalW(seqs); // gaps removed within method
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869 if (alignment != null)
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871 AlignFrame af = new AlignFrame(new Alignment(alignment));
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872 af.clustalColour.setSelected(true);
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873 af.clustalColour_actionPerformed(null);
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874 Desktop.addInternalFrame(af, getTitle().concat(" - ClustalW Alignment"),
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875 700, 500); // JBPNote - is there a new window geom. property ?
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878 JOptionPane.showMessageDialog(Desktop.desktop, "Problem obtaining clustal alignment", "Web service error",
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879 JOptionPane.WARNING_MESSAGE);
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881 webServiceRunning = false;
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883 frame.setClosed(true);
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884 }catch(Exception ex){}
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887 public void paintComponent(Graphics g)
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889 g.setColor(Color.white);
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890 g.fillRect(0,0,getWidth(), getHeight());
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893 g.drawImage(image[imageIndex],10,10,this);
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895 g.setFont(new Font("Arial", Font.BOLD, 12));
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896 g.setColor(Color.black);
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897 g.drawString("Clustal Alignment Web Service running", 30,30);
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902 public void doKeyPressed(KeyEvent evt)
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904 if(evt.isControlDown() && evt.getKeyChar()=='f')
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905 findMenuItem_actionPerformed(null);
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