src/jalview/gui/AnnotationColumnChooser.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21
  22 package jalview.gui;
  23
  24 import jalview.datamodel.HiddenColumns;
  25 import jalview.schemes.AnnotationColourGradient;
  26 import jalview.util.MessageManager;
  27 import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
  28
  29 import java.awt.BorderLayout;
  30 import java.awt.CardLayout;
  31 import java.awt.Color;
  32 import java.awt.Dimension;
  33 import java.awt.event.ActionEvent;
  34 import java.awt.event.ActionListener;
  35 import java.awt.event.ItemEvent;
  36 import java.awt.event.ItemListener;
  37 import java.util.Iterator;
  38
  39 import javax.swing.ButtonGroup;
  40 import javax.swing.JCheckBox;
  41 import javax.swing.JComboBox;
  42 import javax.swing.JInternalFrame;
  43 import javax.swing.JLayeredPane;
  44 import javax.swing.JPanel;
  45 import javax.swing.JRadioButton;
  46 import javax.swing.JTextField;
  47 import javax.swing.border.TitledBorder;
  48 import javax.swing.event.DocumentEvent;
  49 import javax.swing.event.DocumentListener;
  50
  51 import net.miginfocom.swing.MigLayout;
  52
  53 @SuppressWarnings("serial")
  54 public class AnnotationColumnChooser extends AnnotationRowFilter implements
  55         ItemListener
  56 {
  57   private JPanel switchableViewsPanel = new JPanel(new CardLayout());
  58
  59   private JPanel annotationComboBoxPanel = new JPanel();
  60
  61   private StructureFilterPanel gStructureFilterPanel;
  62
  63   private StructureFilterPanel ngStructureFilterPanel;
  64
  65   private StructureFilterPanel currentStructureFilterPanel;
  66
  67   private SearchPanel currentSearchPanel;
  68
  69   private SearchPanel gSearchPanel;
  70
  71   private SearchPanel ngSearchPanel;
  72
  73   private FurtherActionPanel currentFurtherActionPanel;
  74
  75   private FurtherActionPanel gFurtherActionPanel;
  76
  77   private FurtherActionPanel ngFurtherActionPanel;
  78
  79   public static final int ACTION_OPTION_SELECT = 1;
  80
  81   public static int ACTION_OPTION_HIDE = 2;
  82
  83   public static String NO_GRAPH_VIEW = "0";
  84
  85   public static String GRAPH_VIEW = "1";
  86
  87   private int actionOption = ACTION_OPTION_SELECT;
  88
  89   private HiddenColumns oldHiddenColumns;
  90
  91   protected int MIN_WIDTH = 420;
  92
  93   protected int MIN_HEIGHT = 430;
  94
  95   public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
  96   {
  97     super(av, ap);
  98     frame = new JInternalFrame();
  99     frame.setContentPane(this);
 100     frame.setLayer(JLayeredPane.PALETTE_LAYER);
 101     Desktop.addInternalFrame(frame,
 102             MessageManager.getString("label.select_by_annotation"), 520,
 103             215);
 104     frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
 105
 106     addSliderChangeListener();
 107     addSliderMouseListeners();
 108
 109     if (av.getAlignment().getAlignmentAnnotation() == null)
 110     {
 111       return;
 112     }
 113     setOldHiddenColumns(av.getAlignment().getHiddenColumns());
 114     adjusting = true;
 115
 116     setAnnotations(new JComboBox<>(getAnnotationItems(false)));
 117     populateThresholdComboBox(threshold);
 118     AnnotationColumnChooser lastChooser = av
 119             .getAnnotationColumnSelectionState();
 120     // restore Object state from the previous session if one exists
 121     if (lastChooser != null)
 122     {
 123       currentSearchPanel = lastChooser
 124               .getCurrentSearchPanel();
 125       currentStructureFilterPanel = lastChooser
 126               .getCurrentStructureFilterPanel();
 127       annotations.setSelectedIndex(lastChooser
 128               .getAnnotations().getSelectedIndex());
 129       threshold.setSelectedIndex(lastChooser
 130               .getThreshold().getSelectedIndex());
 131       actionOption = lastChooser
 132               .getActionOption();
 133       percentThreshold.setSelected(lastChooser.percentThreshold
 134               .isSelected());
 135     }
 136
 137     try
 138     {
 139       jbInit();
 140     } catch (Exception ex)
 141     {
 142     }
 143     adjusting = false;
 144
 145     updateView();
 146     frame.invalidate();
 147     frame.pack();
 148   }
 149
 150   @Override
 151   protected void jbInit()
 152   {
 153     super.jbInit();
 154
 155     JPanel thresholdPanel = new JPanel();
 156     thresholdPanel.setBorder(new TitledBorder(MessageManager
 157             .getString("label.threshold_filter")));
 158     thresholdPanel.setBackground(Color.white);
 159     thresholdPanel.setFont(JvSwingUtils.getLabelFont());
 160     thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]"));
 161
 162     percentThreshold.setBackground(Color.white);
 163     percentThreshold.setFont(JvSwingUtils.getLabelFont());
 164
 165     JPanel actionPanel = new JPanel();
 166     actionPanel.setBackground(Color.white);
 167     actionPanel.setFont(JvSwingUtils.getLabelFont());
 168
 169     JPanel graphFilterView = new JPanel();
 170     graphFilterView.setLayout(new MigLayout("", "[left][right]", "[][]"));
 171     graphFilterView.setBackground(Color.white);
 172
 173     JPanel noGraphFilterView = new JPanel();
 174     noGraphFilterView.setLayout(new MigLayout("", "[left][right]", "[][]"));
 175     noGraphFilterView.setBackground(Color.white);
 176
 177     annotationComboBoxPanel.setBackground(Color.white);
 178     annotationComboBoxPanel.setFont(JvSwingUtils.getLabelFont());
 179
 180     gSearchPanel = new SearchPanel(this);
 181     ngSearchPanel = new SearchPanel(this);
 182     gFurtherActionPanel = new FurtherActionPanel(this);
 183     ngFurtherActionPanel = new FurtherActionPanel(this);
 184     gStructureFilterPanel = new StructureFilterPanel(this);
 185     ngStructureFilterPanel = new StructureFilterPanel(this);
 186
 187     thresholdPanel.add(getThreshold());
 188     thresholdPanel.add(percentThreshold, "wrap");
 189     thresholdPanel.add(slider, "grow");
 190     thresholdPanel.add(thresholdValue, "span, wrap");
 191
 192     actionPanel.add(ok);
 193     actionPanel.add(cancel);
 194
 195     graphFilterView.add(gSearchPanel, "grow, span, wrap");
 196     graphFilterView.add(gStructureFilterPanel, "grow, span, wrap");
 197     graphFilterView.add(thresholdPanel, "grow, span, wrap");
 198     graphFilterView.add(gFurtherActionPanel);
 199
 200     noGraphFilterView.add(ngSearchPanel, "grow, span, wrap");
 201     noGraphFilterView.add(ngStructureFilterPanel, "grow, span, wrap");
 202     noGraphFilterView.add(ngFurtherActionPanel);
 203
 204     annotationComboBoxPanel.add(getAnnotations());
 205     switchableViewsPanel.add(noGraphFilterView,
 206             AnnotationColumnChooser.NO_GRAPH_VIEW);
 207     switchableViewsPanel.add(graphFilterView,
 208             AnnotationColumnChooser.GRAPH_VIEW);
 209
 210     this.setLayout(new BorderLayout());
 211     this.add(annotationComboBoxPanel, java.awt.BorderLayout.PAGE_START);
 212     this.add(switchableViewsPanel, java.awt.BorderLayout.CENTER);
 213     this.add(actionPanel, java.awt.BorderLayout.SOUTH);
 214
 215     selectedAnnotationChanged();
 216     updateThresholdPanelToolTip();
 217     this.validate();
 218   }
 219
 220   protected void updateThresholdPanelToolTip()
 221   {
 222     thresholdValue.setToolTipText("");
 223     slider.setToolTipText("");
 224
 225     String defaultTtip = MessageManager
 226             .getString("info.change_threshold_mode_to_enable");
 227
 228     String thresh = getThreshold().getSelectedItem().toString();
 229     if (thresh.equalsIgnoreCase("No Threshold"))
 230     {
 231       thresholdValue.setToolTipText(defaultTtip);
 232       slider.setToolTipText(defaultTtip);
 233     }
 234   }
 235
 236   @Override
 237   protected void reset()
 238   {
 239     if (this.getOldHiddenColumns() != null)
 240     {
 241       av.getColumnSelection().clear();
 242
 243       if (av.getAnnotationColumnSelectionState() != null)
 244       {
 245         HiddenColumns oldHidden = av
 246                 .getAnnotationColumnSelectionState()
 247                 .getOldHiddenColumns();
 248         if (oldHidden != null && oldHidden.getHiddenRegions() != null
 249                 && !oldHidden.getHiddenRegions().isEmpty())
 250         {
 251           for (Iterator<int[]> itr = oldHidden.getHiddenRegions()
 252                   .iterator(); itr.hasNext();)
 253           {
 254             int positions[] = itr.next();
 255             av.hideColumns(positions[0], positions[1]);
 256           }
 257         }
 258         av.getAlignment().setHiddenColumns(oldHidden);
 259       }
 260       ap.paintAlignment(true);
 261     }
 262
 263   }
 264
 265   @Override
 266   public void valueChanged(boolean updateAllAnnotation)
 267   {
 268     if (slider.isEnabled())
 269     {
 270       getCurrentAnnotation().threshold.value = slider.getValue() / 1000f;
 271       updateView();
 272       propagateSeqAssociatedThreshold(updateAllAnnotation,
 273               getCurrentAnnotation());
 274       ap.paintAlignment(false);
 275     }
 276   }
 277
 278   @Override
 279   public void updateView()
 280   {
 281     // Check if combobox is still adjusting
 282     if (adjusting)
 283     {
 284       return;
 285     }
 286
 287     AnnotationFilterParameter filterParams = new AnnotationFilterParameter();
 288
 289     setCurrentAnnotation(av.getAlignment().getAlignmentAnnotation()[annmap[getAnnotations()
 290             .getSelectedIndex()]]);
 291
 292     int selectedThresholdItem = getSelectedThresholdItem(getThreshold()
 293             .getSelectedIndex());
 294
 295     slider.setEnabled(true);
 296     thresholdValue.setEnabled(true);
 297     percentThreshold.setEnabled(true);
 298
 299     if (selectedThresholdItem == AnnotationColourGradient.NO_THRESHOLD)
 300     {
 301       slider.setEnabled(false);
 302       thresholdValue.setEnabled(false);
 303       thresholdValue.setText("");
 304       percentThreshold.setEnabled(false);
 305       // build filter params
 306     }
 307     else if (selectedThresholdItem != AnnotationColourGradient.NO_THRESHOLD)
 308     {
 309       if (getCurrentAnnotation().threshold == null)
 310       {
 311         getCurrentAnnotation()
 312                 .setThreshold(
 313                         new jalview.datamodel.GraphLine(
 314                                 (getCurrentAnnotation().graphMax - getCurrentAnnotation().graphMin) / 2f,
 315                                 "Threshold", Color.black));
 316       }
 317
 318       adjusting = true;
 319       float range = getCurrentAnnotation().graphMax * 1000
 320               - getCurrentAnnotation().graphMin * 1000;
 321
 322       slider.setMinimum((int) (getCurrentAnnotation().graphMin * 1000));
 323       slider.setMaximum((int) (getCurrentAnnotation().graphMax * 1000));
 324       slider.setValue((int) (getCurrentAnnotation().threshold.value * 1000));
 325
 326       setThresholdValueText();
 327
 328       slider.setMajorTickSpacing((int) (range / 10f));
 329       slider.setEnabled(true);
 330       thresholdValue.setEnabled(true);
 331       adjusting = false;
 332
 333       // build filter params
 334       filterParams
 335               .setThresholdType(AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
 336       if (getCurrentAnnotation().isQuantitative())
 337       {
 338         filterParams
 339                 .setThresholdValue(getCurrentAnnotation().threshold.value);
 340
 341         if (selectedThresholdItem == AnnotationColourGradient.ABOVE_THRESHOLD)
 342         {
 343           filterParams
 344                   .setThresholdType(AnnotationFilterParameter.ThresholdType.ABOVE_THRESHOLD);
 345         }
 346         else if (selectedThresholdItem == AnnotationColourGradient.BELOW_THRESHOLD)
 347         {
 348           filterParams
 349                   .setThresholdType(AnnotationFilterParameter.ThresholdType.BELOW_THRESHOLD);
 350         }
 351       }
 352     }
 353
 354     updateThresholdPanelToolTip();
 355     if (currentStructureFilterPanel != null)
 356     {
 357       if (currentStructureFilterPanel.alphaHelix.isSelected())
 358       {
 359         filterParams.setFilterAlphaHelix(true);
 360       }
 361       if (currentStructureFilterPanel.betaStrand.isSelected())
 362       {
 363         filterParams.setFilterBetaSheet(true);
 364       }
 365       if (currentStructureFilterPanel.turn.isSelected())
 366       {
 367         filterParams.setFilterTurn(true);
 368       }
 369     }
 370
 371     if (currentSearchPanel != null)
 372     {
 373
 374       if (!currentSearchPanel.searchBox.getText().isEmpty())
 375       {
 376         currentSearchPanel.description.setEnabled(true);
 377         currentSearchPanel.displayName.setEnabled(true);
 378         filterParams.setRegexString(currentSearchPanel.searchBox.getText());
 379         if (currentSearchPanel.displayName.isSelected())
 380         {
 381           filterParams
 382                   .addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DISPLAY_STRING);
 383         }
 384         if (currentSearchPanel.description.isSelected())
 385         {
 386           filterParams
 387                   .addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DESCRIPTION);
 388         }
 389       }
 390       else
 391       {
 392         currentSearchPanel.description.setEnabled(false);
 393         currentSearchPanel.displayName.setEnabled(false);
 394       }
 395     }
 396
 397     // show hidden columns here, before changing the column selection in
 398     // filterAnnotations, because showing hidden columns has the side effect of
 399     // adding them to the selection
 400     av.showAllHiddenColumns();
 401     av.getColumnSelection().filterAnnotations(
 402             getCurrentAnnotation().annotations, filterParams);
 403
 404     if (getActionOption() == ACTION_OPTION_HIDE)
 405     {
 406       av.hideSelectedColumns();
 407     }
 408
 409     filterParams = null;
 410     av.setAnnotationColumnSelectionState(this);
 411     ap.paintAlignment(true);
 412   }
 413
 414   public HiddenColumns getOldHiddenColumns()
 415   {
 416     return oldHiddenColumns;
 417   }
 418
 419   public void setOldHiddenColumns(HiddenColumns currentHiddenColumns)
 420   {
 421     if (currentHiddenColumns != null)
 422     {
 423       this.oldHiddenColumns = new HiddenColumns(currentHiddenColumns);
 424     }
 425   }
 426
 427   public FurtherActionPanel getCurrentFutherActionPanel()
 428   {
 429     return currentFurtherActionPanel;
 430   }
 431
 432   public void setCurrentFutherActionPanel(
 433           FurtherActionPanel currentFutherActionPanel)
 434   {
 435     this.currentFurtherActionPanel = currentFutherActionPanel;
 436   }
 437
 438   public SearchPanel getCurrentSearchPanel()
 439   {
 440     return currentSearchPanel;
 441   }
 442
 443   public void setCurrentSearchPanel(SearchPanel currentSearchPanel)
 444   {
 445     this.currentSearchPanel = currentSearchPanel;
 446   }
 447
 448   public int getActionOption()
 449   {
 450     return actionOption;
 451   }
 452
 453   public void setActionOption(int actionOption)
 454   {
 455     this.actionOption = actionOption;
 456   }
 457
 458   public StructureFilterPanel getCurrentStructureFilterPanel()
 459   {
 460     return currentStructureFilterPanel;
 461   }
 462
 463   public void setCurrentStructureFilterPanel(
 464           StructureFilterPanel currentStructureFilterPanel)
 465   {
 466     this.currentStructureFilterPanel = currentStructureFilterPanel;
 467   }
 468
 469   public void select_action(ActionEvent actionEvent)
 470   {
 471     JRadioButton radioButton = (JRadioButton) actionEvent.getSource();
 472     if (radioButton.isSelected())
 473     {
 474       setActionOption(ACTION_OPTION_SELECT);
 475       updateView();
 476     }
 477   }
 478
 479   public void hide_action(ActionEvent actionEvent)
 480   {
 481     JRadioButton radioButton = (JRadioButton) actionEvent.getSource();
 482     if (radioButton.isSelected())
 483     {
 484       setActionOption(ACTION_OPTION_HIDE);
 485       updateView();
 486     }
 487   }
 488
 489   @Override
 490   public void itemStateChanged(ItemEvent e)
 491   {
 492     selectedAnnotationChanged();
 493   }
 494
 495   @Override
 496   public void selectedAnnotationChanged()
 497   {
 498     String currentView = AnnotationColumnChooser.NO_GRAPH_VIEW;
 499     if (av.getAlignment()
 500             .getAlignmentAnnotation()[annmap[getAnnotations()
 501             .getSelectedIndex()]].isQuantitative())
 502     {
 503       currentView = AnnotationColumnChooser.GRAPH_VIEW;
 504     }
 505
 506     gSearchPanel.syncState();
 507     gFurtherActionPanel.syncState();
 508     gStructureFilterPanel.syncState();
 509
 510     ngSearchPanel.syncState();
 511     ngFurtherActionPanel.syncState();
 512     ngStructureFilterPanel.syncState();
 513
 514     CardLayout switchableViewsLayout = (CardLayout) switchableViewsPanel
 515             .getLayout();
 516     switchableViewsLayout.show(switchableViewsPanel, currentView);
 517     updateView();
 518   }
 519
 520   public class FurtherActionPanel extends JPanel
 521   {
 522     private AnnotationColumnChooser aColChooser;
 523
 524     private JRadioButton hideOption = new JRadioButton();
 525
 526     private JRadioButton selectOption = new JRadioButton();
 527
 528     private ButtonGroup optionsGroup = new ButtonGroup();
 529
 530     public FurtherActionPanel(AnnotationColumnChooser aColChooser)
 531     {
 532       this.aColChooser = aColChooser;
 533       JvSwingUtils.jvInitComponent(selectOption, "action.select");
 534       selectOption.addActionListener(new ActionListener()
 535       {
 536         @Override
 537         public void actionPerformed(ActionEvent actionEvent)
 538         {
 539           selectRadioAction(actionEvent);
 540         }
 541       });
 542
 543       JvSwingUtils.jvInitComponent(hideOption, "action.hide");
 544       hideOption.addActionListener(new ActionListener()
 545       {
 546         @Override
 547         public void actionPerformed(ActionEvent actionEvent)
 548         {
 549           hideRadioAction(actionEvent);
 550         }
 551       });
 552
 553       optionsGroup.add(selectOption);
 554       optionsGroup.add(hideOption);
 555       optionsGroup.setSelected(selectOption.getModel(), true);
 556
 557       JvSwingUtils.jvInitComponent(this);
 558       syncState();
 559
 560       this.add(selectOption);
 561       this.add(hideOption);
 562     }
 563
 564     public void selectRadioAction(ActionEvent actionEvent)
 565     {
 566       aColChooser.setCurrentFutherActionPanel(this);
 567       aColChooser.select_action(actionEvent);
 568     }
 569
 570     public void hideRadioAction(ActionEvent actionEvent)
 571     {
 572       aColChooser.setCurrentFutherActionPanel(this);
 573       aColChooser.hide_action(actionEvent);
 574     }
 575
 576     public void syncState()
 577     {
 578       if (aColChooser.getActionOption() == AnnotationColumnChooser.ACTION_OPTION_HIDE)
 579       {
 580         this.optionsGroup.setSelected(this.hideOption.getModel(), true);
 581       }
 582       else
 583       {
 584         this.optionsGroup.setSelected(this.selectOption.getModel(), true);
 585       }
 586     }
 587   }
 588
 589   public class StructureFilterPanel extends JPanel
 590   {
 591     private AnnotationColumnChooser aColChooser;
 592
 593     private JCheckBox alphaHelix = new JCheckBox();
 594
 595     private JCheckBox betaStrand = new JCheckBox();
 596
 597     private JCheckBox turn = new JCheckBox();
 598
 599     private JCheckBox all = new JCheckBox();
 600
 601     public StructureFilterPanel(AnnotationColumnChooser aColChooser)
 602     {
 603       this.aColChooser = aColChooser;
 604
 605       JvSwingUtils.jvInitComponent(alphaHelix, "label.alpha_helix");
 606       alphaHelix.addActionListener(new ActionListener()
 607       {
 608         @Override
 609         public void actionPerformed(ActionEvent actionEvent)
 610         {
 611           alphaHelix_actionPerformed();
 612         }
 613       });
 614
 615       JvSwingUtils.jvInitComponent(betaStrand, "label.beta_strand");
 616       betaStrand.addActionListener(new ActionListener()
 617       {
 618         @Override
 619         public void actionPerformed(ActionEvent actionEvent)
 620         {
 621           betaStrand_actionPerformed();
 622         }
 623       });
 624
 625       JvSwingUtils.jvInitComponent(turn, "label.turn");
 626       turn.addActionListener(new ActionListener()
 627       {
 628         @Override
 629         public void actionPerformed(ActionEvent actionEvent)
 630         {
 631           turn_actionPerformed();
 632         }
 633       });
 634
 635       JvSwingUtils.jvInitComponent(all, "label.select_all");
 636       all.addActionListener(new ActionListener()
 637       {
 638         @Override
 639         public void actionPerformed(ActionEvent actionEvent)
 640         {
 641           all_actionPerformed();
 642         }
 643       });
 644
 645       this.setBorder(new TitledBorder(MessageManager
 646               .getString("label.structures_filter")));
 647       JvSwingUtils.jvInitComponent(this);
 648
 649       this.add(all);
 650       this.add(alphaHelix);
 651       this.add(betaStrand);
 652       this.add(turn);
 653     }
 654
 655     public void alphaHelix_actionPerformed()
 656     {
 657       updateSelectAllState();
 658       aColChooser.setCurrentStructureFilterPanel(this);
 659       aColChooser.updateView();
 660     }
 661
 662     public void betaStrand_actionPerformed()
 663     {
 664       updateSelectAllState();
 665       aColChooser.setCurrentStructureFilterPanel(this);
 666       aColChooser.updateView();
 667     }
 668
 669     public void turn_actionPerformed()
 670     {
 671       updateSelectAllState();
 672       aColChooser.setCurrentStructureFilterPanel(this);
 673       aColChooser.updateView();
 674     }
 675
 676     public void all_actionPerformed()
 677     {
 678       if (all.isSelected())
 679       {
 680         alphaHelix.setSelected(true);
 681         betaStrand.setSelected(true);
 682         turn.setSelected(true);
 683       }
 684       else
 685       {
 686         alphaHelix.setSelected(false);
 687         betaStrand.setSelected(false);
 688         turn.setSelected(false);
 689       }
 690       aColChooser.setCurrentStructureFilterPanel(this);
 691       aColChooser.updateView();
 692     }
 693
 694     public void updateSelectAllState()
 695     {
 696       if (alphaHelix.isSelected() && betaStrand.isSelected()
 697               && turn.isSelected())
 698       {
 699         all.setSelected(true);
 700       }
 701       else
 702       {
 703         all.setSelected(false);
 704       }
 705     }
 706
 707     public void syncState()
 708     {
 709       StructureFilterPanel sfp = aColChooser
 710               .getCurrentStructureFilterPanel();
 711       if (sfp != null)
 712       {
 713         alphaHelix.setSelected(sfp.alphaHelix.isSelected());
 714         betaStrand.setSelected(sfp.betaStrand.isSelected());
 715         turn.setSelected(sfp.turn.isSelected());
 716         if (sfp.all.isSelected())
 717         {
 718           all.setSelected(true);
 719           alphaHelix.setSelected(true);
 720           betaStrand.setSelected(true);
 721           turn.setSelected(true);
 722         }
 723       }
 724
 725     }
 726   }
 727
 728   public class SearchPanel extends JPanel
 729   {
 730     private AnnotationColumnChooser aColChooser;
 731
 732     private JCheckBox displayName = new JCheckBox();
 733
 734     private JCheckBox description = new JCheckBox();
 735
 736     private JTextField searchBox = new JTextField(10);
 737
 738     public SearchPanel(AnnotationColumnChooser aColChooser)
 739     {
 740
 741       this.aColChooser = aColChooser;
 742       JvSwingUtils.jvInitComponent(this);
 743       this.setBorder(new TitledBorder(MessageManager
 744               .getString("label.search_filter")));
 745
 746       JvSwingUtils.jvInitComponent(searchBox);
 747       searchBox.setToolTipText(MessageManager
 748               .getString("info.enter_search_text_here"));
 749       searchBox.getDocument().addDocumentListener(new DocumentListener()
 750       {
 751         @Override
 752         public void insertUpdate(DocumentEvent e)
 753         {
 754           searchStringAction();
 755         }
 756
 757         @Override
 758         public void removeUpdate(DocumentEvent e)
 759         {
 760           searchStringAction();
 761         }
 762
 763         @Override
 764         public void changedUpdate(DocumentEvent e)
 765         {
 766           searchStringAction();
 767         }
 768       });
 769
 770       JvSwingUtils.jvInitComponent(displayName, "label.label");
 771       displayName.setEnabled(false);
 772       displayName.addActionListener(new ActionListener()
 773       {
 774         @Override
 775         public void actionPerformed(ActionEvent actionEvent)
 776         {
 777           displayNameCheckboxAction();
 778         }
 779       });
 780
 781       JvSwingUtils.jvInitComponent(description, "label.description");
 782       description.setEnabled(false);
 783       description.addActionListener(new ActionListener()
 784       {
 785         @Override
 786         public void actionPerformed(ActionEvent actionEvent)
 787         {
 788           discriptionCheckboxAction();
 789         }
 790       });
 791
 792       syncState();
 793       this.add(searchBox);
 794       this.add(displayName);
 795       this.add(description);
 796     }
 797
 798     public void displayNameCheckboxAction()
 799     {
 800       aColChooser.setCurrentSearchPanel(this);
 801       aColChooser.updateView();
 802     }
 803
 804     public void discriptionCheckboxAction()
 805     {
 806       aColChooser.setCurrentSearchPanel(this);
 807       aColChooser.updateView();
 808     }
 809
 810     public void searchStringAction()
 811     {
 812       aColChooser.setCurrentSearchPanel(this);
 813       aColChooser.updateView();
 814       updateSearchPanelToolTips();
 815     }
 816
 817     public void syncState()
 818     {
 819       SearchPanel sp = aColChooser.getCurrentSearchPanel();
 820       if (sp != null)
 821       {
 822         description.setEnabled(sp.description.isEnabled());
 823         description.setSelected(sp.description.isSelected());
 824
 825         displayName.setEnabled(sp.displayName.isEnabled());
 826         displayName.setSelected(sp.displayName.isSelected());
 827
 828         searchBox.setText(sp.searchBox.getText());
 829       }
 830       updateSearchPanelToolTips();
 831     }
 832
 833     public void updateSearchPanelToolTips()
 834     {
 835       String defaultTtip = MessageManager
 836               .getString("info.enter_search_text_to_enable");
 837       String labelTtip = MessageManager.formatMessage(
 838               "info.search_in_annotation_label", annotations
 839                       .getSelectedItem().toString());
 840       String descTtip = MessageManager.formatMessage(
 841               "info.search_in_annotation_description", annotations
 842                       .getSelectedItem().toString());
 843       displayName.setToolTipText(displayName.isEnabled() ? labelTtip
 844               : defaultTtip);
 845       description.setToolTipText(description.isEnabled() ? descTtip
 846               : defaultTtip);
 847     }
 848   }
 849
 850 }