2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.gui;
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21 import jalview.datamodel.*;
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24 import java.awt.event.*;
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25 import java.awt.image.*;
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27 import javax.swing.*;
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34 * @version $Revision$
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36 public class AnnotationLabels extends JPanel implements MouseListener,
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37 MouseMotionListener, ActionListener
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39 static String ADDNEW = "Add New Row";
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40 static String HIDE = "Hide This Row";
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41 static String DELETE = "Delete This Row";
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42 static String SHOWALL = "Show All Hidden Rows";
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43 static String OUTPUT_TEXT = "Show Values In Textbox";
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44 boolean active = false;
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47 boolean resizing = false;
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50 int selectedRow = 0;
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51 int scrollOffset = 0;
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54 * Creates a new AnnotationLabels object.
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56 * @param ap DOCUMENT ME!
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58 public AnnotationLabels(AlignmentPanel ap)
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62 java.net.URL url = getClass().getResource("/images/idwidth.gif");
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67 temp = java.awt.Toolkit.getDefaultToolkit().createImage(url);
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72 MediaTracker mt = new MediaTracker(this);
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73 mt.addImage(temp, 0);
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76 catch (Exception ex)
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80 BufferedImage bi = new BufferedImage(temp.getHeight(this),
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81 temp.getWidth(this), BufferedImage.TYPE_INT_RGB);
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82 Graphics2D g = (Graphics2D) bi.getGraphics();
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83 g.rotate(Math.toRadians(90));
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84 g.drawImage(temp, 0, -bi.getWidth(this), this);
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87 addMouseListener(this);
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88 addMouseMotionListener(this);
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94 * @param y DOCUMENT ME!
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96 public void setScrollOffset(int y)
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105 * @param evt DOCUMENT ME!
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107 public void actionPerformed(ActionEvent evt)
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110 AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();
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112 if (evt.getActionCommand().equals(ADDNEW))
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114 String label = JOptionPane.showInputDialog(this,
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115 "Label for annotation");
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122 ap.av.alignment.addAnnotation(new AlignmentAnnotation(label,
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124 new Annotation[ap.av.alignment.getWidth()]));
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126 dif = aa[aa.length - 1].height;
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128 else if (evt.getActionCommand().equals(HIDE))
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130 aa[selectedRow].visible = false;
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132 if (aa[selectedRow].label.equals("Conservation"))
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134 ap.av.showConservation = false;
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137 if (aa[selectedRow].label.equals("Quality"))
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139 ap.av.showQuality = false;
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142 if (aa[selectedRow].label.equals("Consensus"))
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144 ap.av.showIdentity = false;
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147 dif = aa[selectedRow].height * -1;
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149 else if (evt.getActionCommand().equals(DELETE))
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151 ap.av.alignment.deleteAnnotation(aa[selectedRow]);
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152 dif = aa[selectedRow].height * -1;
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154 else if (evt.getActionCommand().equals(SHOWALL))
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156 for (int i = 0; i < aa.length; i++)
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158 if (!aa[i].visible)
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160 dif += aa[i].height;
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161 aa[i].visible = true;
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165 else if (evt.getActionCommand().equals(OUTPUT_TEXT))
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167 CutAndPasteTransfer cap = new CutAndPasteTransfer();
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168 Desktop.addInternalFrame(cap,
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169 ap.alignFrame.getTitle() + " - " + aa[selectedRow].label, 500,
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171 cap.setText(aa[selectedRow].toString());
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175 ap.annotationPanel.adjustPanelHeight();
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177 Dimension d = ap.annotationScroller.getPreferredSize();
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178 ap.annotationScroller.setPreferredSize(new Dimension(d.width,
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180 d = ap.annotationSpaceFillerHolder.getPreferredSize();
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181 ap.annotationSpaceFillerHolder.setPreferredSize(new Dimension(d.width,
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190 * @param evt DOCUMENT ME!
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192 public void mousePressed(MouseEvent evt)
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200 * @param evt DOCUMENT ME!
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202 public void mouseReleased(MouseEvent evt)
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211 * @param evt DOCUMENT ME!
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213 public void mouseEntered(MouseEvent evt)
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222 * @param evt DOCUMENT ME!
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224 public void mouseExited(MouseEvent evt)
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233 * @param evt DOCUMENT ME!
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235 public void mouseDragged(MouseEvent evt)
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239 Dimension d = ap.annotationScroller.getPreferredSize();
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240 int dif = evt.getY() - oldY;
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242 dif /= ap.av.charHeight;
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243 dif *= ap.av.charHeight;
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245 if ((d.height - dif) > 20)
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247 ap.annotationScroller.setPreferredSize(new Dimension(d.width,
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249 d = ap.annotationSpaceFillerHolder.getPreferredSize();
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250 ap.annotationSpaceFillerHolder.setPreferredSize(new Dimension(
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251 d.width, d.height - dif));
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261 * @param evt DOCUMENT ME!
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263 public void mouseMoved(MouseEvent evt)
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270 * @param evt DOCUMENT ME!
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272 public void mouseClicked(MouseEvent evt)
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274 int y = evt.getY() - scrollOffset;
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275 AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();
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277 if ((aa == null) || (aa.length == 0))
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279 JPopupMenu pop = new JPopupMenu("Annotations");
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280 JMenuItem item = new JMenuItem(ADDNEW);
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281 item.addActionListener(this);
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283 pop.show(this, evt.getX(), evt.getY());
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290 for (int i = 0; i < aa.length; i++)
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292 if (!aa[i].visible)
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297 height += aa[i].height;
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307 JPopupMenu pop = new JPopupMenu("Annotations");
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308 JMenuItem item = new JMenuItem(ADDNEW);
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309 item.addActionListener(this);
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311 item = new JMenuItem(HIDE);
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312 item.addActionListener(this);
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314 item = new JMenuItem(DELETE);
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315 item.addActionListener(this);
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317 item = new JMenuItem(SHOWALL);
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318 item.addActionListener(this);
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320 item = new JMenuItem(OUTPUT_TEXT);
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321 item.addActionListener(this);
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324 if (aa[selectedRow].label.equals("Consensus"))
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326 pop.addSeparator();
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327 final JCheckBoxMenuItem cbmi = new JCheckBoxMenuItem(
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328 "Ignore Gaps In Consensus",
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329 ap.av.getIgnoreGapsConsensus());
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330 cbmi.addActionListener(new ActionListener()
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331 {public void actionPerformed(ActionEvent e)
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333 ap.av.setIgnoreGapsConsensus(cbmi.getState());
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341 pop.show(this, evt.getX(), evt.getY());
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347 * @param g1 DOCUMENT ME!
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349 public void paintComponent(Graphics g1)
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351 Graphics2D g = (Graphics2D) g1;
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352 g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,
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353 RenderingHints.VALUE_ANTIALIAS_ON);
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361 * @param g DOCUMENT ME!
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363 public void drawComponent(Graphics2D g)
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365 FontMetrics fm = g.getFontMetrics(g.getFont());
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366 g.setColor(Color.white);
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367 g.fillRect(0, 0, getWidth(), getHeight());
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369 g.translate(0, scrollOffset);
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370 g.setColor(Color.black);
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372 AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();
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373 int y = g.getFont().getSize();
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375 int width = getWidth();
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377 width = ap.calculateIdWidth().width + 4;
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381 for (int i = 0; i < aa.length; i++)
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383 if (!aa[i].visible)
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388 x = width - fm.stringWidth(aa[i].label) - 3;
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392 y += (aa[i].height / 3);
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395 g.drawString(aa[i].label, x, y);
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399 y += ((2 * aa[i].height) / 3);
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412 g.drawImage(image, 2, 0, this);
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416 if ((aa == null) || (aa.length < 1))
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418 g.drawString("Right click", 2, 8);
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419 g.drawString("to add annotation", 2, 18);
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