2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import javax.swing.JOptionPane;
24 import jalview.datamodel.PDBEntry;
25 import jalview.datamodel.SequenceI;
26 import jalview.util.MessageManager;
29 * GUI related routines for associating PDB files with sequences
34 public class AssociatePdbFileWithSeq
38 * assocate the given PDB file with
43 public PDBEntry associatePdbWithSeq(String choice, String protocol,
44 SequenceI sequence, boolean prompt)
46 PDBEntry entry = new PDBEntry();
49 MCview.PDBfile pdbfile = new MCview.PDBfile(choice, protocol);
51 if (pdbfile.id == null)
57 reply = JOptionPane.showInternalInputDialog(Desktop.desktop,
59 .getString("label.couldnt_find_pdb_id_in_file"),
60 MessageManager.getString("label.no_pdb_id_in_file"),
61 JOptionPane.QUESTION_MESSAGE);
72 entry.setId(pdbfile.id);
75 } catch (java.io.IOException ex)
80 entry.setFile(choice);
81 sequence.getDatasetSequence().addPDBId(entry);