4 import java.awt.event.*;
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6 import jalview.datamodel.*;
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8 import javax.swing.*;
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10 public class IdPanel extends JPanel implements MouseListener, MouseMotionListener {
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12 protected IdCanvas idCanvas;
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13 protected AlignViewport av;
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14 protected AlignmentPanel alignPanel;
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20 SequenceGroup selectedSequenceGroup;
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22 public IdPanel(AlignViewport av, AlignmentPanel parent)
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25 alignPanel = parent;
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26 idCanvas = new IdCanvas(av);
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27 setLayout(new BorderLayout());
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28 add(idCanvas, BorderLayout.CENTER);
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29 addMouseListener(this);
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30 addMouseMotionListener(this);
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33 public void mouseMoved(MouseEvent e) {}
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35 public void selectSeqs(int start, int end) {
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42 for (int i = start; i <= end; i++)
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44 SequenceI pickedSeq = av.getAlignment().getSequenceAt(i);
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45 if (av.getSelection().contains(pickedSeq))
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47 av.getSelection().removeElement(pickedSeq);
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48 selectedSequenceGroup.deleteSequence(pickedSeq);
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52 av.getSelection().addElement(pickedSeq);
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53 if(selectedSequenceGroup==null)
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55 selectedSequenceGroup = new SequenceGroup();
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56 av.setRubberbandGroup( selectedSequenceGroup );
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57 // av.alignment.addGroup( selectedSequenceGroup );
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58 selectedSequenceGroup.setStartRes(0);
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59 selectedSequenceGroup.setEndRes( pickedSeq.getSequence().length());
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62 selectedSequenceGroup.addSequence( pickedSeq );
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67 alignPanel.seqPanel.seqCanvas.paintFlag=true;
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68 alignPanel.repaint();
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73 public void mouseDragged(MouseEvent e) {
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75 int seq = av.getIndex(y);
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81 selectSeqs(lastid - 1, seq);
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82 else if (seq > lastid)
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83 selectSeqs(lastid + 1, seq);
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90 public void mouseClicked(MouseEvent e)
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92 if (e.getClickCount() == 2)
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94 int seq = av.getIndex(e.getY());
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95 String id = av.getAlignment().getSequenceAt(seq).getName();
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98 jalview.util.BrowserLauncher.openURL(
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99 "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[swall-id:" + id +
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101 }catch(Exception ex){ex.printStackTrace();}
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105 public void mouseEntered(MouseEvent e) { }
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106 public void mouseExited (MouseEvent e) { }
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108 public void mousePressed(MouseEvent e) {
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109 if (e.getClickCount() == 2)
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113 int seq = av.getIndex(y);
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116 if( javax.swing.SwingUtilities.isRightMouseButton(e))
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118 jalview.gui.PopupMenu pop = new jalview.gui.PopupMenu( av , alignPanel.seqPanel);
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119 pop.show(this, e.getX(), y);
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122 /* String id = av.getAlignment().getSequenceAt(seq).getName();
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123 String s = (String)JOptionPane.showInternalInputDialog(
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125 "Edit sequence name",
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126 "Edit sequence name",
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127 JOptionPane.PLAIN_MESSAGE,
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134 av.getAlignment().getSequenceAt(seq).setName(s);
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135 alignPanel.RefreshPanels();
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142 selectedSequenceGroup = av.getRubberbandGroup();
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143 if(selectedSequenceGroup==null)
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145 selectedSequenceGroup = new SequenceGroup();
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146 av.setRubberbandGroup(selectedSequenceGroup);
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149 selectedSequenceGroup.setStartRes(0);
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150 selectedSequenceGroup.setEndRes( av.getAlignment().getWidth()-1 );
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152 // selectedSequenceGroup = av.alignment.findGroup(seq);
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155 selectSeqs(seq,seq);
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162 public void mouseReleased(MouseEvent e)
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165 PaintRefresher.Refresh(this);
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166 selectedSequenceGroup = null;
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