4 import java.awt.event.*;
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6 import jalview.datamodel.*;
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8 import javax.swing.*;
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10 public class IdPanel extends JPanel implements MouseListener, MouseMotionListener {
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12 protected IdCanvas idCanvas;
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13 protected AlignViewport av;
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14 protected AlignmentPanel alignPanel;
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20 SequenceGroup selectedSequenceGroup;
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22 public IdPanel(AlignViewport av, AlignmentPanel parent)
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25 alignPanel = parent;
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26 idCanvas = new IdCanvas(av);
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27 setLayout(new BorderLayout());
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28 add(idCanvas, BorderLayout.CENTER);
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29 addMouseListener(this);
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30 addMouseMotionListener(this);
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33 public void mouseMoved(MouseEvent e) {}
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35 public void selectSeqs(int start, int end) {
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43 for (int i = start; i <= end; i++)
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45 SequenceI pickedSeq = av.getAlignment().getSequenceAt(i);
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46 if (av.getSelection().contains(pickedSeq))
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48 av.getSelection().removeElement(pickedSeq);
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49 selectedSequenceGroup.deleteSequence(pickedSeq);
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53 av.getSelection().addElement(pickedSeq);
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54 if(selectedSequenceGroup==null)
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56 selectedSequenceGroup = new SequenceGroup();
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57 av.setRubberbandGroup( selectedSequenceGroup );
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58 // av.alignment.addGroup( selectedSequenceGroup );
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59 selectedSequenceGroup.setStartRes(0);
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60 selectedSequenceGroup.setEndRes( pickedSeq.getSequence().length());
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63 selectedSequenceGroup.addSequence( pickedSeq );
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68 alignPanel.seqPanel.seqCanvas.paintFlag=true;
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69 alignPanel.repaint();
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74 public void mouseDragged(MouseEvent e) {
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76 int seq = av.getIndex(y);
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79 selectSeqs(lastid - 1, seq);
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80 else if (seq > lastid)
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81 selectSeqs(lastid + 1, seq);
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88 public void mouseClicked(MouseEvent e)
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90 if (e.getClickCount() == 2)
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92 int seq = av.getIndex(e.getY());
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93 String id = av.getAlignment().getSequenceAt(seq).getName();
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96 jalview.util.BrowserLauncher.openURL(
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97 "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[swall-id:" + id +
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99 }catch(Exception ex){ex.printStackTrace();}
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103 public void mouseEntered(MouseEvent e) { }
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104 public void mouseExited (MouseEvent e) { }
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106 public void mousePressed(MouseEvent e) {
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107 if (e.getClickCount() == 2)
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111 int seq = av.getIndex(y);
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113 selectedSequenceGroup = av.getRubberbandGroup();
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114 if (selectedSequenceGroup == null)
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116 selectedSequenceGroup = new SequenceGroup();
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117 av.setRubberbandGroup(selectedSequenceGroup);
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120 selectedSequenceGroup.setStartRes(0);
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121 selectedSequenceGroup.setEndRes(av.getAlignment().getWidth() - 1);
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124 selectSeqs(seq, seq);
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128 if( javax.swing.SwingUtilities.isRightMouseButton(e))
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130 jalview.gui.PopupMenu pop = new jalview.gui.PopupMenu(alignPanel, av.getAlignment().getSequenceAt(seq) );
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131 pop.show(this, e.getX(), y);
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138 public void mouseReleased(MouseEvent e)
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141 PaintRefresher.Refresh(this);
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142 selectedSequenceGroup = null;
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