2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import javax.swing.JComponent;
24 import javax.swing.SwingUtilities;
26 import jalview.api.AlignmentViewPanel;
27 import jalview.api.structures.JalviewStructureDisplayI;
28 import jalview.datamodel.PDBEntry;
29 import jalview.datamodel.SequenceI;
30 import jalview.ext.rbvi.chimera.JalviewChimeraBinding;
31 import jalview.io.DataSourceType;
32 import jalview.structure.AtomSpec;
33 import jalview.structure.StructureSelectionManager;
35 public class JalviewChimeraBindingModel extends JalviewChimeraBinding
37 public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame,
38 StructureSelectionManager ssm, PDBEntry[] pdbentry,
39 SequenceI[][] sequenceIs, DataSourceType protocol)
41 super(ssm, pdbentry, sequenceIs, protocol);
42 setViewer(chimeraViewFrame);
46 public jalview.api.SequenceRenderer getSequenceRenderer(
47 AlignmentViewPanel alignment)
49 return new SequenceRenderer(((AlignmentPanel) alignment).av);
53 public void refreshGUI()
55 SwingUtilities.invokeLater(new Runnable()
60 JalviewStructureDisplayI theViewer = getViewer();
61 theViewer.updateTitleAndMenus();
62 ((JComponent) theViewer).revalidate();