2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.gui;
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23 import java.awt.event.*;
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24 import javax.swing.*;
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25 import javax.swing.event.*;
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27 import jalview.datamodel.*;
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28 import jalview.jbgui.*;
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29 import jalview.schemes.*;
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35 * @version $Revision$
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37 public class SliderPanel
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38 extends GSliderPanel
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40 static JInternalFrame conservationSlider;
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41 static JInternalFrame PIDSlider;
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43 boolean forConservation = true;
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47 * Creates a new SliderPanel object.
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49 * @param ap DOCUMENT ME!
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50 * @param value DOCUMENT ME!
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51 * @param forConserve DOCUMENT ME!
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52 * @param cs DOCUMENT ME!
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54 public SliderPanel(final AlignmentPanel ap, int value, boolean forConserve,
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59 forConservation = forConserve;
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60 undoButton.setVisible(false);
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61 applyButton.setVisible(false);
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63 if (forConservation)
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65 label.setText("Enter value to increase conservation visibility");
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66 slider.setMinimum(0);
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67 slider.setMaximum(100);
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71 label.setText("Enter % identity above which to colour residues");
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72 slider.setMinimum(0);
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73 slider.setMaximum(100);
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76 slider.addChangeListener(new ChangeListener()
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78 public void stateChanged(ChangeEvent evt)
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80 valueField.setText(slider.getValue() + "");
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81 valueChanged(slider.getValue());
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85 slider.addMouseListener(new MouseAdapter()
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87 public void mouseReleased(MouseEvent evt)
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89 ap.paintAlignment(true);
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93 slider.setValue(value);
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94 valueField.setText(value + "");
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100 * @param ap DOCUMENT ME!
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101 * @param cs DOCUMENT ME!
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102 * @param source DOCUMENT ME!
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104 * @return DOCUMENT ME!
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106 public static int setConservationSlider(AlignmentPanel ap,
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107 ColourSchemeI cs, String source)
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109 SliderPanel sp = null;
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111 if (conservationSlider == null)
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113 sp = new SliderPanel(ap, cs.getConservationInc(), true, cs);
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114 conservationSlider = new JInternalFrame();
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115 conservationSlider.setContentPane(sp);
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116 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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120 sp = (SliderPanel) conservationSlider.getContentPane();
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124 conservationSlider.setTitle("Conservation Colour Increment (" +
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127 if (ap.av.alignment.getGroups() != null)
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129 sp.setAllGroupsCheckEnabled(true);
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133 sp.setAllGroupsCheckEnabled(false);
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136 return sp.getValue();
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142 public static void showConservationSlider()
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146 PIDSlider.setClosed(true);
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149 catch (Exception ex)
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153 if (!conservationSlider.isVisible())
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155 Desktop.addInternalFrame(conservationSlider,
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156 conservationSlider.getTitle(), 420, 90, false);
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157 conservationSlider.addInternalFrameListener(new javax.swing.event.
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158 InternalFrameAdapter()
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160 public void internalFrameClosed(
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161 javax.swing.event.InternalFrameEvent e)
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163 conservationSlider = null;
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166 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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173 * @param ap DOCUMENT ME!
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174 * @param cs DOCUMENT ME!
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175 * @param source DOCUMENT ME!
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177 * @return DOCUMENT ME!
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179 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
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182 SliderPanel pid = null;
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184 int threshold = cs.getThreshold();
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186 if (PIDSlider == null)
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188 pid = new SliderPanel(ap, threshold, false, cs);
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189 PIDSlider = new JInternalFrame();
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190 PIDSlider.setContentPane(pid);
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191 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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195 pid = (SliderPanel) PIDSlider.getContentPane();
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199 PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
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201 if (ap.av.alignment.getGroups() != null)
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203 pid.setAllGroupsCheckEnabled(true);
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207 pid.setAllGroupsCheckEnabled(false);
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210 return pid.getValue();
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216 public static void showPIDSlider()
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220 conservationSlider.setClosed(true);
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221 conservationSlider = null;
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223 catch (Exception ex)
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227 if (!PIDSlider.isVisible())
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229 Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
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231 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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232 PIDSlider.addInternalFrameListener(new javax.swing.event.
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233 InternalFrameAdapter()
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235 public void internalFrameClosed(
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236 javax.swing.event.InternalFrameEvent e)
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241 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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248 * @param i DOCUMENT ME!
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250 public void valueChanged(int i)
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257 ColourSchemeI toChange = null;
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258 Vector allGroups = null;
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259 int groupIndex = 0;
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261 if (allGroupsCheck.isSelected())
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263 allGroups = ap.av.alignment.getGroups();
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264 groupIndex = allGroups.size() - 1;
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271 while (groupIndex > -1)
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273 if (allGroups != null)
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275 toChange = ( (SequenceGroup) allGroups.get(groupIndex)).cs;
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277 if (toChange == null)
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285 if (forConservation)
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287 if (toChange.conservationApplied())
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289 toChange.setConservationInc(i);
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294 toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus());
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300 ap.seqPanel.seqCanvas.repaint();
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306 * @param b DOCUMENT ME!
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308 public void setAllGroupsCheckEnabled(boolean b)
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310 allGroupsCheck.setEnabled(b);
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316 * @param e DOCUMENT ME!
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318 public void valueField_actionPerformed(ActionEvent e)
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322 int i = Integer.parseInt(valueField.getText());
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323 slider.setValue(i);
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325 catch (NumberFormatException ex)
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327 valueField.setText(slider.getValue() + "");
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334 * @param value DOCUMENT ME!
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336 public void setValue(int value)
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338 slider.setValue(value);
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344 * @return DOCUMENT ME!
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346 public int getValue()
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348 return Integer.parseInt(valueField.getText());
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351 public void slider_mouseReleased(MouseEvent e)
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353 if (ap.overviewPanel != null)
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355 ap.overviewPanel.updateOverviewImage();
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