3 import jalview.jbgui.*;
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4 import jalview.schemes.*;
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5 import jalview.datamodel.*;
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6 import java.awt.event.*;
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7 import javax.swing.event.*;
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8 import javax.swing.*;
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11 public class SliderPanel extends GSliderPanel
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14 boolean forConservation = true;
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17 static JInternalFrame conservationSlider;
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18 static JInternalFrame PIDSlider;
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20 public static int setConservationSlider(AlignmentPanel ap, ColourSchemeI cs, String source)
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22 SliderPanel sp = null;
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23 ConservationColourScheme ccs = (ConservationColourScheme)cs;
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24 int value = ccs.inc;
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26 if(conservationSlider == null)
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28 sp = new SliderPanel(ap, value, true, cs);
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29 conservationSlider = new JInternalFrame();
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30 conservationSlider.setContentPane(sp);
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34 sp = (SliderPanel)conservationSlider.getContentPane();
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39 conservationSlider.setTitle("Conservation Colour Increment ("+source+")");
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40 if(ap.av.alignment.getGroups()!=null)
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41 sp.setAllGroupsCheckEnabled( true );
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43 sp.setAllGroupsCheckEnabled( false);
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45 return sp.getValue();
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48 public static void showConservationSlider()
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51 PIDSlider.setClosed(true);
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53 }catch(Exception ex){}
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56 if(!conservationSlider.isVisible())
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58 Desktop.addInternalFrame(conservationSlider, conservationSlider.getTitle(), 420, 90, false);
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59 conservationSlider.addInternalFrameListener(new javax.swing.event.
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60 InternalFrameAdapter()
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62 public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
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64 conservationSlider = null;
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67 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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72 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
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74 SliderPanel pid = null;
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75 if(PIDSlider == null)
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77 pid = new SliderPanel(ap, 50, false, cs);
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78 PIDSlider = new JInternalFrame();
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79 PIDSlider.setContentPane(pid);
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80 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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84 pid = (SliderPanel)PIDSlider.getContentPane();
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87 PIDSlider.setTitle("Percentage Identity Threshold ("+source+")");
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89 if (ap.av.alignment.getGroups() != null)
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90 pid.setAllGroupsCheckEnabled(true);
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92 pid.setAllGroupsCheckEnabled(false);
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94 return pid.getValue();
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98 public static void showPIDSlider()
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101 conservationSlider.setClosed(true);
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102 conservationSlider = null;
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103 }catch(Exception ex){}
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105 if(!PIDSlider.isVisible())
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107 Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, false);
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108 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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109 PIDSlider.addInternalFrameListener(new javax.swing.event.
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110 InternalFrameAdapter()
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112 public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
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117 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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123 public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, ColourSchemeI cs)
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127 forConservation = forConserve;
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128 undoButton.setVisible(false);
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129 applyButton.setVisible(false);
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130 if(forConservation)
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132 label.setText("Enter the value by which to decrease conservation colour intensity");
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133 slider.setMinimum(0);
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134 slider.setMaximum(50);
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138 label.setText("Enter the percent identity above which to colour residues");
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139 slider.setMinimum(0);
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140 slider.setMaximum(100);
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145 slider.addChangeListener( new ChangeListener()
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147 public void stateChanged(ChangeEvent evt)
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149 valueField.setText( slider.getValue()+"" );
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150 valueChanged( slider.getValue() );
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154 slider.setValue(value);
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155 valueField.setText(value+"");
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158 public void valueChanged(int i)
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163 ColourSchemeI toChange = null;
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164 Vector allGroups = null;
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165 int groupIndex = 0;
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167 if(allGroupsCheck.isSelected())
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169 allGroups = ap.av.alignment.getGroups();
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170 groupIndex = allGroups.size()-1;
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176 while( groupIndex > -1 )
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178 if(allGroups!=null)
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179 toChange = ((SequenceGroup)allGroups.get(groupIndex)).cs;
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181 if (forConservation)
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183 if (toChange instanceof ConservationColourScheme)
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184 ( (ConservationColourScheme) toChange).inc = i;
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188 if (toChange.canThreshold())
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189 ( (ResidueColourScheme) toChange).setThreshold(i);
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195 ap.seqPanel.repaint();
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199 public void setAllGroupsCheckEnabled(boolean b)
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201 allGroupsCheck.setEnabled(b);
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205 public void valueField_actionPerformed(ActionEvent e)
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208 int i = Integer.parseInt(valueField.getText());
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209 slider.setValue(i);
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211 catch(Exception ex)
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213 valueField.setText( slider.getValue()+"" );
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217 public void setValue(int value)
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219 slider.setValue(value);
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221 public int getValue()
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223 return Integer.parseInt(valueField.getText());
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