2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
25 import java.awt.event.*;
27 import javax.swing.event.*;
29 import jalview.datamodel.*;
30 import jalview.jbgui.*;
31 import jalview.schemes.*;
32 import jalview.util.MessageManager;
40 public class SliderPanel extends GSliderPanel
42 static JInternalFrame conservationSlider;
44 static JInternalFrame PIDSlider;
48 boolean forConservation = true;
53 * Creates a new SliderPanel object.
64 public SliderPanel(final AlignmentPanel ap, int value,
65 boolean forConserve, ColourSchemeI cs)
69 forConservation = forConserve;
70 undoButton.setVisible(false);
71 applyButton.setVisible(false);
75 label.setText(MessageManager
76 .getString("label.enter_value_increase_conservation_visibility"));
78 slider.setMaximum(100);
82 label.setText(MessageManager
83 .getString("label.enter_percentage_identity_above_which_colour_residues"));
85 slider.setMaximum(100);
88 slider.addChangeListener(new ChangeListener()
90 public void stateChanged(ChangeEvent evt)
92 valueField.setText(slider.getValue() + "");
93 valueChanged(slider.getValue());
97 slider.addMouseListener(new MouseAdapter()
99 public void mouseReleased(MouseEvent evt)
101 ap.paintAlignment(true);
105 slider.setValue(value);
106 valueField.setText(value + "");
119 * @return DOCUMENT ME!
121 public static int setConservationSlider(AlignmentPanel ap,
122 ColourSchemeI cs, String source)
124 SliderPanel sp = null;
126 if (conservationSlider == null)
128 sp = new SliderPanel(ap, cs.getConservationInc(), true, cs);
129 conservationSlider = new JInternalFrame();
130 conservationSlider.setContentPane(sp);
131 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
135 sp = (SliderPanel) conservationSlider.getContentPane();
139 conservationSlider.setTitle("Conservation Colour Increment (" + source
142 if (ap.av.getAlignment().getGroups() != null)
144 sp.setAllGroupsCheckEnabled(true);
148 sp.setAllGroupsCheckEnabled(false);
151 return sp.getValue();
157 public static void showConservationSlider()
161 PIDSlider.setClosed(true);
163 } catch (Exception ex)
167 if (!conservationSlider.isVisible())
169 Desktop.addInternalFrame(conservationSlider,
170 conservationSlider.getTitle(), 420, 90, false);
172 .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
174 public void internalFrameClosed(
175 javax.swing.event.InternalFrameEvent e)
177 conservationSlider = null;
180 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
194 * @return DOCUMENT ME!
196 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
199 SliderPanel pid = null;
201 int threshold = cs.getThreshold();
203 if (PIDSlider == null)
205 pid = new SliderPanel(ap, threshold, false, cs);
206 PIDSlider = new JInternalFrame();
207 PIDSlider.setContentPane(pid);
208 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
212 pid = (SliderPanel) PIDSlider.getContentPane();
216 PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
218 if (ap.av.getAlignment().getGroups() != null)
220 pid.setAllGroupsCheckEnabled(true);
224 pid.setAllGroupsCheckEnabled(false);
227 return pid.getValue();
233 public static void showPIDSlider()
237 conservationSlider.setClosed(true);
238 conservationSlider = null;
239 } catch (Exception ex)
243 if (!PIDSlider.isVisible())
245 Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
247 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
249 .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
251 public void internalFrameClosed(
252 javax.swing.event.InternalFrameEvent e)
257 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
267 public void valueChanged(int i)
274 ColourSchemeI toChange = cs;
275 Iterator<SequenceGroup> allGroups = null;
277 if (allGroupsCheck.isSelected())
279 allGroups = ap.av.getAlignment().getGroups().listIterator();
282 while (toChange != null)
286 toChange.setConservationInc(i);
290 toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus());
292 if (allGroups != null && allGroups.hasNext())
294 while ((toChange = allGroups.next().cs) == null
295 && allGroups.hasNext())
304 ap.seqPanel.seqCanvas.repaint();
313 public void setAllGroupsCheckEnabled(boolean b)
315 allGroupsCheck.setEnabled(b);
324 public void valueField_actionPerformed(ActionEvent e)
328 int i = Integer.parseInt(valueField.getText());
330 } catch (NumberFormatException ex)
332 valueField.setText(slider.getValue() + "");
342 public void setValue(int value)
344 slider.setValue(value);
350 * @return DOCUMENT ME!
352 public int getValue()
354 return Integer.parseInt(valueField.getText());
357 public void slider_mouseReleased(MouseEvent e)
359 if (ap.overviewPanel != null)
361 ap.overviewPanel.updateOverviewImage();