3 import jalview.jbgui.*;
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4 import jalview.schemes.*;
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5 import jalview.datamodel.*;
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6 import java.awt.event.*;
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7 import javax.swing.event.*;
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8 import javax.swing.*;
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11 public class SliderPanel extends GSliderPanel
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14 boolean forConservation = true;
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17 static JInternalFrame conservationSlider;
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18 static JInternalFrame PIDSlider;
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20 public static int setConservationSlider(AlignmentPanel ap, ColourSchemeI cs, String source)
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22 SliderPanel sp = null;
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23 ConservationColourScheme ccs = (ConservationColourScheme)cs;
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25 if(conservationSlider == null)
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27 sp = new SliderPanel(ap, ccs.inc, true, cs);
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28 conservationSlider = new JInternalFrame();
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29 conservationSlider.setContentPane(sp);
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30 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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34 sp = (SliderPanel)conservationSlider.getContentPane();
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38 conservationSlider.setTitle("Conservation Colour Increment ("+source+")");
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39 if(ap.av.alignment.getGroups()!=null)
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40 sp.setAllGroupsCheckEnabled( true );
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42 sp.setAllGroupsCheckEnabled( false);
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44 return sp.getValue();
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47 public static void showConservationSlider()
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50 PIDSlider.setClosed(true);
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52 }catch(Exception ex){}
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55 if(!conservationSlider.isVisible())
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57 Desktop.addInternalFrame(conservationSlider, conservationSlider.getTitle(), 420, 90, false);
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58 conservationSlider.addInternalFrameListener(new javax.swing.event.
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59 InternalFrameAdapter()
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61 public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
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63 conservationSlider = null;
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66 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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71 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
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73 SliderPanel pid = null;
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76 if (cs instanceof ResidueColourScheme)
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77 threshold = ( ( (ResidueColourScheme) cs).getThreshold());
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78 else if (cs instanceof ScoreColourScheme)
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79 threshold = ( ( (ScoreColourScheme) cs).getThreshold());
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82 if(PIDSlider == null)
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84 pid = new SliderPanel(ap, threshold, false, cs);
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85 PIDSlider = new JInternalFrame();
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86 PIDSlider.setContentPane(pid);
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87 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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91 pid = (SliderPanel)PIDSlider.getContentPane();
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94 PIDSlider.setTitle("Percentage Identity Threshold ("+source+")");
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96 if (ap.av.alignment.getGroups() != null)
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97 pid.setAllGroupsCheckEnabled(true);
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99 pid.setAllGroupsCheckEnabled(false);
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101 return pid.getValue();
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105 public static void showPIDSlider()
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108 conservationSlider.setClosed(true);
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109 conservationSlider = null;
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110 }catch(Exception ex){}
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112 if(!PIDSlider.isVisible())
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114 Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, false);
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115 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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116 PIDSlider.addInternalFrameListener(new javax.swing.event.
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117 InternalFrameAdapter()
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119 public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
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124 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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130 public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, ColourSchemeI cs)
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134 forConservation = forConserve;
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135 undoButton.setVisible(false);
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136 applyButton.setVisible(false);
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137 if(forConservation)
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139 label.setText("Enter value to increase conservation visibility");
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140 slider.setMinimum(0);
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141 slider.setMaximum(50);
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145 label.setText("Enter % identity above which to colour residues");
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146 slider.setMinimum(0);
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147 slider.setMaximum(100);
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152 slider.addChangeListener( new ChangeListener()
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154 public void stateChanged(ChangeEvent evt)
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156 valueField.setText( slider.getValue()+"" );
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157 valueChanged( slider.getValue() );
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161 slider.setValue(value);
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162 valueField.setText(value+"");
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165 public void valueChanged(int i)
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170 ColourSchemeI toChange = null;
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171 Vector allGroups = null;
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172 int groupIndex = 0;
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174 if(allGroupsCheck.isSelected())
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176 allGroups = ap.av.alignment.getGroups();
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177 groupIndex = allGroups.size()-1;
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183 while( groupIndex > -1 )
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185 if(allGroups!=null)
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186 toChange = ((SequenceGroup)allGroups.get(groupIndex)).cs;
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188 if (forConservation)
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190 if (toChange instanceof ConservationColourScheme)
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191 ( (ConservationColourScheme) toChange).inc = i;
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195 ( (ResidueColourScheme) toChange).setThreshold(i);
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201 ap.seqPanel.seqCanvas.repaint();
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205 public void setAllGroupsCheckEnabled(boolean b)
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207 allGroupsCheck.setEnabled(b);
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211 public void valueField_actionPerformed(ActionEvent e)
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214 int i = Integer.parseInt(valueField.getText());
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215 slider.setValue(i);
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217 catch(Exception ex)
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219 valueField.setText( slider.getValue()+"" );
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223 public void setValue(int value)
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225 slider.setValue(value);
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227 public int getValue()
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229 return Integer.parseInt(valueField.getText());
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