2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.gui;
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21 import jalview.datamodel.*;
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23 import jalview.jbgui.*;
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25 import jalview.schemes.*;
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27 import java.awt.event.*;
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31 import javax.swing.*;
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32 import javax.swing.event.*;
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39 * @version $Revision$
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41 public class SliderPanel extends GSliderPanel
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43 static JInternalFrame conservationSlider;
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44 static JInternalFrame PIDSlider;
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46 boolean forConservation = true;
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50 * Creates a new SliderPanel object.
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52 * @param ap DOCUMENT ME!
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53 * @param value DOCUMENT ME!
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54 * @param forConserve DOCUMENT ME!
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55 * @param cs DOCUMENT ME!
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57 public SliderPanel(AlignmentPanel ap, int value, boolean forConserve,
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62 forConservation = forConserve;
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63 undoButton.setVisible(false);
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64 applyButton.setVisible(false);
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66 if (forConservation)
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68 label.setText("Enter value to increase conservation visibility");
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69 slider.setMinimum(0);
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70 slider.setMaximum(50);
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74 label.setText("Enter % identity above which to colour residues");
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75 slider.setMinimum(0);
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76 slider.setMaximum(100);
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79 slider.addChangeListener(new ChangeListener()
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81 public void stateChanged(ChangeEvent evt)
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83 valueField.setText(slider.getValue() + "");
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84 valueChanged(slider.getValue());
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88 slider.setValue(value);
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89 valueField.setText(value + "");
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95 * @param ap DOCUMENT ME!
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96 * @param cs DOCUMENT ME!
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97 * @param source DOCUMENT ME!
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99 * @return DOCUMENT ME!
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101 public static int setConservationSlider(AlignmentPanel ap,
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102 ColourSchemeI cs, String source)
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104 SliderPanel sp = null;
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106 if (conservationSlider == null)
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108 sp = new SliderPanel(ap, cs.getConservationInc(), true, cs);
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109 conservationSlider = new JInternalFrame();
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110 conservationSlider.setContentPane(sp);
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111 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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115 sp = (SliderPanel) conservationSlider.getContentPane();
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119 conservationSlider.setTitle("Conservation Colour Increment (" +
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122 if (ap.av.alignment.getGroups() != null)
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124 sp.setAllGroupsCheckEnabled(true);
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128 sp.setAllGroupsCheckEnabled(false);
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131 return sp.getValue();
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137 public static void showConservationSlider()
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141 PIDSlider.setClosed(true);
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144 catch (Exception ex)
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148 if (!conservationSlider.isVisible())
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150 Desktop.addInternalFrame(conservationSlider,
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151 conservationSlider.getTitle(), 420, 90, false);
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152 conservationSlider.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
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154 public void internalFrameClosed(
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155 javax.swing.event.InternalFrameEvent e)
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157 conservationSlider = null;
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160 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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167 * @param ap DOCUMENT ME!
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168 * @param cs DOCUMENT ME!
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169 * @param source DOCUMENT ME!
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171 * @return DOCUMENT ME!
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173 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
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176 SliderPanel pid = null;
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178 int threshold = cs.getThreshold();
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180 if (PIDSlider == null)
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182 pid = new SliderPanel(ap, threshold, false, cs);
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183 PIDSlider = new JInternalFrame();
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184 PIDSlider.setContentPane(pid);
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185 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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189 pid = (SliderPanel) PIDSlider.getContentPane();
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193 PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
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195 if (ap.av.alignment.getGroups() != null)
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197 pid.setAllGroupsCheckEnabled(true);
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201 pid.setAllGroupsCheckEnabled(false);
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204 return pid.getValue();
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210 public static void showPIDSlider()
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214 conservationSlider.setClosed(true);
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215 conservationSlider = null;
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217 catch (Exception ex)
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221 if (!PIDSlider.isVisible())
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223 Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
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225 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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226 PIDSlider.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
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228 public void internalFrameClosed(
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229 javax.swing.event.InternalFrameEvent e)
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234 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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241 * @param i DOCUMENT ME!
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243 public void valueChanged(int i)
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246 {System.out.println("cs is null");
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252 ColourSchemeI toChange = null;
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253 Vector allGroups = null;
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254 int groupIndex = 0;
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256 if (allGroupsCheck.isSelected())
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258 allGroups = ap.av.alignment.getGroups();
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259 groupIndex = allGroups.size() - 1;
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267 while (groupIndex > -1)
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269 if (allGroups != null)
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271 toChange = ((SequenceGroup) allGroups.get(groupIndex)).cs;
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273 if (toChange == null)
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281 if (forConservation)
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283 if (toChange.conservationApplied())
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285 toChange.setConservationInc(i);
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290 toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus());
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296 ap.seqPanel.seqCanvas.repaint();
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302 * @param b DOCUMENT ME!
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304 public void setAllGroupsCheckEnabled(boolean b)
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306 allGroupsCheck.setEnabled(b);
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312 * @param e DOCUMENT ME!
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314 public void valueField_actionPerformed(ActionEvent e)
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318 int i = Integer.parseInt(valueField.getText());
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319 slider.setValue(i);
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321 catch (Exception ex)
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323 valueField.setText(slider.getValue() + "");
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330 * @param value DOCUMENT ME!
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332 public void setValue(int value)
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334 slider.setValue(value);
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340 * @return DOCUMENT ME!
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342 public int getValue()
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344 return Integer.parseInt(valueField.getText());
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