2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import jalview.gui.OptsAndParamsPage.OptionBox;
24 import jalview.gui.OptsAndParamsPage.ParamBox;
25 import jalview.util.MessageManager;
26 import jalview.ws.jws2.JabaParamStore;
27 import jalview.ws.jws2.JabaPreset;
28 import jalview.ws.jws2.Jws2Discoverer;
29 import jalview.ws.jws2.jabaws2.Jws2Instance;
30 import jalview.ws.params.ArgumentI;
31 import jalview.ws.params.OptionI;
32 import jalview.ws.params.ParamDatastoreI;
33 import jalview.ws.params.ParameterI;
34 import jalview.ws.params.WsParamSetI;
36 import java.awt.BorderLayout;
37 import java.awt.Component;
38 import java.awt.Dimension;
39 import java.awt.FlowLayout;
41 import java.awt.GridBagConstraints;
42 import java.awt.GridBagLayout;
43 import java.awt.GridLayout;
44 import java.awt.Rectangle;
45 import java.awt.event.ActionEvent;
46 import java.awt.event.ActionListener;
47 import java.awt.event.HierarchyBoundsListener;
48 import java.awt.event.HierarchyEvent;
49 import java.awt.event.ItemEvent;
50 import java.awt.event.ItemListener;
51 import java.awt.event.WindowEvent;
52 import java.awt.event.WindowListener;
54 import java.util.Hashtable;
55 import java.util.Iterator;
56 import java.util.List;
57 import java.util.Vector;
59 import javax.swing.JButton;
60 import javax.swing.JComboBox;
61 import javax.swing.JDialog;
62 import javax.swing.JFrame;
63 import javax.swing.JLabel;
64 import javax.swing.JOptionPane;
65 import javax.swing.JPanel;
66 import javax.swing.JScrollPane;
67 import javax.swing.JSplitPane;
68 import javax.swing.JTextArea;
69 import javax.swing.border.TitledBorder;
70 import javax.swing.event.DocumentEvent;
71 import javax.swing.event.DocumentListener;
73 import net.miginfocom.swing.MigLayout;
75 import compbio.metadata.Argument;
76 import compbio.metadata.Option;
77 import compbio.metadata.Parameter;
78 import compbio.metadata.Preset;
79 import compbio.metadata.PresetManager;
80 import compbio.metadata.RunnerConfig;
83 * job parameter editing/browsing dialog box. User can browse existing settings
84 * (user + presets + Defaults), and any changes to parameters creates a modified
85 * user parameter set. LOGIC: If the parameter set is modified, and its name is
86 * a valid, non-existant user parameter set, then a save button is shown. If the
87 * parameter set is modified and its name is a valid, extant user parameter set,
88 * then an update button is shown. If user parameter set's name is edited, and
89 * old name exists as a writable user parameter set, then rename button is
90 * shown. If current parameter set is associated with a user defined parameter
91 * set, then : if set is modifed, a 'revert' button is shown. if set is not
92 * modified, a 'delete' button is shown.
97 public class WsJobParameters extends JPanel implements ItemListener,
98 ActionListener, DocumentListener, OptsParametersContainerI
100 URL linkImageURL = getClass().getResource("/images/link.gif");
102 private static final String SVC_DEF = "Defaults"; // this is the null
103 // parameter set as shown to
107 * manager for options and parameters.
109 OptsAndParamsPage opanp = new OptsAndParamsPage(this);
112 * panel containing job options
114 JPanel jobOptions = new JPanel();
117 * panel containing job parameters
119 JPanel paramList = new JPanel();
121 JPanel SetNamePanel = new JPanel();
123 JPanel setDetails = new JPanel();
125 JSplitPane settingsPanel = new JSplitPane();
127 JPanel jobPanel = new JPanel();
129 JScrollPane jobOptionsPane = new JScrollPane();
131 JButton createpref = new JButton();
133 JButton deletepref = new JButton();
135 JButton revertpref = new JButton();
137 JButton updatepref = new JButton();
139 JButton startjob = new JButton();
141 JButton canceljob = new JButton();
143 JComboBox setName = new JComboBox();
145 JTextArea setDescr = new JTextArea();
147 JScrollPane paramPane = new JScrollPane();
149 // ScrollablePanel optsAndparams = new ScrollablePanel();
150 JPanel optsAndparams = new JPanel();
152 RunnerConfig serviceOptions;
154 ParamDatastoreI paramStore;
156 private int MAX_OPTWIDTH = 200;
158 WsJobParameters(Jws2Instance service)
163 public WsJobParameters(Jws2Instance service, WsParamSetI preset)
165 this(null, service, preset, null);
171 * - if null, create new JFrame outside of desktop
175 public WsJobParameters(JFrame parent, Jws2Instance service,
176 WsParamSetI preset, List<Argument> jobArgset)
178 this(parent, null, service, preset, jobArgset);
189 public WsJobParameters(JFrame parent, ParamDatastoreI paramStorei,
190 Jws2Instance service, WsParamSetI preset, List<Argument> jobArgset)
194 this.paramStore = paramStorei;
195 if (paramStore == null)
197 paramStore = service.getParamStore();
199 this.service = service;
200 // argSetModified(false);
201 // populate parameter table
202 initForService(service, preset, jobArgset);
203 // display in new JFrame attached to parent.
209 JDialog frame = null;
212 * shows a modal dialog containing the parameters.
216 public boolean showRunDialog()
219 frame = new JDialog(Desktop.instance, true);
221 frame.setTitle(MessageManager.formatMessage("label.edit_params_for",
223 { service.getActionText() }));
224 Rectangle deskr = Desktop.instance.getBounds();
225 Dimension pref = this.getPreferredSize();
226 frame.setBounds(new Rectangle(
227 (int) (deskr.getCenterX() - pref.width / 2), (int) (deskr
228 .getCenterY() - pref.height / 2), pref.width,
230 frame.setContentPane(this);
232 // should perhaps recover defaults from user prefs.
235 javax.swing.SwingUtilities.invokeLater(new Runnable()
239 // jobPanel.setDividerLocation(0.25);
243 frame.setVisible(true);
252 private void jbInit()
254 this.addHierarchyBoundsListener(new HierarchyBoundsListener()
258 public void ancestorResized(HierarchyEvent arg0)
260 refreshParamLayout();
264 public void ancestorMoved(HierarchyEvent arg0)
266 // TODO Auto-generated method stub
270 updatepref = JvSwingUtils.makeButton(
271 MessageManager.getString("action.update"),
272 MessageManager.getString("label.update_user_parameter_set"),
276 public void actionPerformed(ActionEvent e)
278 update_actionPerformed(e);
281 deletepref = JvSwingUtils.makeButton(
282 MessageManager.getString("action.delete"),
283 MessageManager.getString("label.delete_user_parameter_set"),
287 public void actionPerformed(ActionEvent e)
289 delete_actionPerformed(e);
292 createpref = JvSwingUtils.makeButton(
293 MessageManager.getString("action.create"),
294 MessageManager.getString("label.create_user_parameter_set"),
298 public void actionPerformed(ActionEvent e)
300 create_actionPerformed(e);
303 revertpref = JvSwingUtils.makeButton(MessageManager
304 .getString("action.revert"), MessageManager
305 .getString("label.revert_changes_user_parameter_set"),
309 public void actionPerformed(ActionEvent e)
311 revert_actionPerformed(e);
314 startjob = JvSwingUtils.makeButton(
315 MessageManager.getString("action.start_job"),
316 MessageManager.getString("label.start_job_current_settings"),
319 public void actionPerformed(ActionEvent e)
321 startjob_actionPerformed(e);
324 canceljob = JvSwingUtils.makeButton(
325 MessageManager.getString("action.cancel_job"),
326 MessageManager.getString("label.cancel_job_close_dialog"),
329 public void actionPerformed(ActionEvent e)
331 canceljob_actionPerformed(e);
335 setDetails.setBorder(new TitledBorder(MessageManager
336 .getString("label.details")));
337 setDetails.setLayout(new BorderLayout());
338 setDescr.setColumns(40);
339 setDescr.setWrapStyleWord(true);
340 setDescr.setLineWrap(true);
341 setDescr.setBackground(getBackground());
342 setDescr.setEditable(true);
343 setDescr.getDocument().addDocumentListener(this);
344 setDescr.setToolTipText(MessageManager
345 .getString("label.edit_notes_parameter_set"));
346 JScrollPane setDescrView = new JScrollPane();
347 setDescrView.getViewport().setView(setDescr);
348 setName.setEditable(true);
349 setName.addItemListener(this);
350 setName.getEditor().addActionListener(this);
351 JPanel setNameInfo = new JPanel(new FlowLayout(FlowLayout.LEFT));
352 GridBagLayout gbl = new GridBagLayout();
353 SetNamePanel.setLayout(gbl);
355 JLabel setNameLabel = new JLabel(
356 MessageManager.getString("label.current_parameter_set_name"));
357 setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
359 setNameInfo.add(setNameLabel);
360 setNameInfo.add(setName);
362 // initial button visibility
363 updatepref.setVisible(false);
364 deletepref.setVisible(false);
365 revertpref.setVisible(false);
366 createpref.setVisible(false);
367 JPanel setsavebuts = new JPanel();
368 setsavebuts.setLayout(new FlowLayout(FlowLayout.LEFT)); // GridLayout(1,2));
369 ((FlowLayout) setsavebuts.getLayout()).setHgap(10);
370 ((FlowLayout) setsavebuts.getLayout()).setVgap(0);
371 JPanel spacer = new JPanel();
372 spacer.setPreferredSize(new Dimension(2, 30));
373 setsavebuts.add(spacer);
374 setsavebuts.add(deletepref);
375 setsavebuts.add(revertpref);
376 setsavebuts.add(createpref);
377 setsavebuts.add(updatepref);
378 // setsavebuts.setSize(new Dimension(150, 30));
379 JPanel buttonArea = new JPanel(new GridLayout(1, 1));
380 buttonArea.add(setsavebuts);
381 SetNamePanel.add(setNameInfo);
382 GridBagConstraints gbc = new GridBagConstraints();
384 gbl.setConstraints(setNameInfo, gbc);
385 SetNamePanel.add(buttonArea);
386 gbc = new GridBagConstraints();
390 gbl.setConstraints(buttonArea, gbc);
391 setDetails.add(setDescrView, BorderLayout.CENTER);
393 // paramPane.setPreferredSize(new Dimension(360, 400));
394 // paramPane.setPreferredSize(null);
395 jobOptions.setBorder(new TitledBorder(MessageManager
396 .getString("label.options")));
397 jobOptions.setOpaque(true);
398 paramList.setBorder(new TitledBorder(MessageManager
399 .getString("label.parameters")));
400 paramList.setOpaque(true);
401 JPanel bjo = new JPanel(new BorderLayout()), bjp = new JPanel(
403 bjo.add(jobOptions, BorderLayout.CENTER);
404 bjp.add(paramList, BorderLayout.CENTER);
407 // optsAndparams.setScrollableWidth(ScrollableSizeHint.FIT);
408 // optsAndparams.setScrollableHeight(ScrollableSizeHint.NONE);
409 // optsAndparams.setLayout(new BorderLayout());
410 optsAndparams.setLayout(new BorderLayout());
411 optsAndparams.add(jobOptions, BorderLayout.NORTH);
412 optsAndparams.add(paramList, BorderLayout.CENTER);
413 JPanel jp = new JPanel(new BorderLayout());
414 jp.add(optsAndparams, BorderLayout.CENTER);
415 paramPane.getViewport().setView(jp);
416 paramPane.setBorder(null);
417 setLayout(new BorderLayout());
418 jobPanel.setPreferredSize(null);
419 jobPanel.setLayout(new BorderLayout());
420 jobPanel.add(setDetails, BorderLayout.NORTH);
421 jobPanel.add(paramPane, BorderLayout.CENTER);
422 // jobPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
424 add(SetNamePanel, BorderLayout.NORTH);
425 add(jobPanel, BorderLayout.CENTER);
427 JPanel dialogpanel = new JPanel();
428 dialogpanel.add(startjob);
429 dialogpanel.add(canceljob);
430 // JAL-1580: setMaximumSize() doesn't work, so just size for the worst case:
431 setPreferredSize(new Dimension(540, Desktop.instance.getHeight()));
432 add(dialogpanel, BorderLayout.SOUTH);
436 protected void revert_actionPerformed(ActionEvent e)
438 reInitDialog(lastParmSet);
439 updateWebServiceMenus();
442 protected void update_actionPerformed(ActionEvent e)
446 String curname = ((String) setName.getSelectedItem()).trim();
447 _updatePreset(lastParmSet, curname);
448 lastParmSet = curname;
450 initArgSetModified();
451 syncSetNamesWithStore();
455 private void _deleteUserPreset(String lastParmSet2)
457 paramStore.deletePreset(lastParmSet2);
460 protected void delete_actionPerformed(ActionEvent e)
464 // delete current preset's saved entry
465 _deleteUserPreset(lastParmSet);
467 reInitDialog(null); // service default
468 updateWebServiceMenus();
471 protected void create_actionPerformed(ActionEvent e)
473 String curname = ((String) setName.getSelectedItem()).trim();
474 if (curname.length() > 0)
476 _storeCurrentPreset(curname);
477 lastParmSet = curname;
479 reInitDialog(curname);
480 initArgSetModified();
481 updateWebServiceMenus();
485 // TODO: show warning
486 System.err.println("Invalid name. Not saved.");
490 protected void canceljob_actionPerformed(ActionEvent e)
495 frame.setVisible(false);
499 protected void startjob_actionPerformed(ActionEvent e)
504 frame.setVisible(false);
508 Jws2Instance service;
511 * list of service presets in the gui
513 Hashtable servicePresets = null;
516 * set if dialog is being set - so handlers will avoid spurious events
518 boolean settingDialog = false;
520 void initForService(Jws2Instance service, WsParamSetI jabap,
521 List<Argument> jabajobArgset)
523 WsParamSetI p = null;
524 List<ArgumentI> jobArgset = null;
525 settingDialog = true;
526 { // instantiate the abstract proxy for Jaba objects
527 jobArgset = jabajobArgset == null ? null : JabaParamStore
528 .getJwsArgsfromJaba(jabajobArgset);
529 p = jabap; // (jabap != null) ? paramStore.getPreset(jabap.getName()) :
533 Hashtable exnames = new Hashtable();
534 for (int i = 0, iSize = setName.getItemCount(); i < iSize; i++)
536 exnames.put(setName.getItemAt(i), setName.getItemAt(i));
538 servicePresets = new Hashtable();
539 // Add the default entry - if not present already.
540 if (!exnames.contains(SVC_DEF))
542 setName.addItem(SVC_DEF);
543 exnames.put(SVC_DEF, SVC_DEF);
544 servicePresets.put(SVC_DEF, SVC_DEF);
546 String curname = (p == null ? "" : p.getName());
547 for (WsParamSetI pr : paramStore.getPresets())
549 if (!pr.isModifiable())
551 servicePresets.put(pr.getName(), "preset");
556 if (!exnames.contains(pr.getName()))
558 setName.addItem(pr.getName());
561 // TODO: if initial jobArgset matches a given user setting or preset then
562 // should recover setting accordingly
563 // updateTable(p, jobArgset);
566 reInitDialog(p.getName());
567 initArgSetModified();
571 if (jobArgset != null && jobArgset.size() > 0)
573 curSetName = "Supplied Settings";
574 isUserPreset = false;
575 updateTable(p, jobArgset);
576 setName.setSelectedItem(curSetName);
577 updateButtonDisplay();
585 settingDialog = false;
589 @SuppressWarnings("unchecked")
590 private void updateTable(WsParamSetI p, List<ArgumentI> jobArgset)
592 boolean setDefaultParams = false;
593 if (lastParmSet == null)
595 isUserPreset = false;
596 // First call - so provide Service default settings
597 setName.setSelectedItem(lastSetName = SVC_DEF);
599 if (p == null && SVC_DEF.equals("" + setName.getSelectedItem()))
601 // indicate that service defaults should be set if available
602 setDefaultParams = true;
604 // populate table from default parameter set.
605 List<ArgumentI> args = paramStore.getServiceParameters();
607 // split to params and required arguments
610 boolean optset = false;
611 for (ArgumentI myarg : args)
613 // Ideally, Argument would implement isRequired !
614 if (myarg instanceof ParameterI)
616 ParameterI parm = (ParameterI) myarg;
617 opanp.addParameter(parm).validate();
621 if (myarg instanceof OptionI)
623 OptionI opt = (OptionI) myarg;
624 OptionBox ob = opanp.addOption(opt);
625 ob.resetToDefault(setDefaultParams);
626 if (MAX_OPTWIDTH < ob.getPreferredSize().width)
628 MAX_OPTWIDTH = ob.getPreferredSize().width;
631 cw += ob.getPreferredSize().width + 5;
635 System.err.println("Ignoring unknown service argument type "
636 + myarg.getClass().getName());
640 args = null; // no more args to process.
644 isUserPreset = false;
645 // initialise setname
646 setName.setSelectedItem(lastSetName = p.getName());
647 setDescr.setText(lastDescrText = p.getDescription());
651 args = p.getArguments();
652 } catch (Exception e)
656 // TODO: check if args should be unselected prior to resetting using the
660 if (jobArgset != null)
662 argSetModified(jobArgset, true);
665 // get setargs from current object
668 for (ArgumentI arg : args)
670 if (arg instanceof ParameterI)
672 opanp.setParameter((ParameterI) arg);
676 if (arg instanceof OptionI)
678 // System.out.println("Setting option "
679 // + System.identityHashCode(arg) + ":" + arg.getName()
680 // + " with " + arg.getDefaultValue());
681 opanp.selectOption((OptionI) arg, arg.getValue());
688 refreshParamLayout();
692 private boolean isModified()
694 return modifiedElements.size() > 0;
697 private Hashtable modifiedElements = new Hashtable();
700 * reset gui and modification state settings
702 private void initArgSetModified()
705 modifiedElements.clear();
706 updateButtonDisplay();
709 private void updateButtonDisplay()
711 boolean _update = false, _create = false, _delete = false, _revert = false;
712 if (modifiedElements.size() > 0)
716 _update = isUserPreset; // can only update user presets
717 if (!isUserPreset || modifiedElements.containsKey(setName))
719 // name modified - can create new preset
727 // can still delete a user preset
728 _delete = isUserPreset;
730 createpref.setVisible(_create);
731 updatepref.setVisible(_update);
732 deletepref.setVisible(_delete);
733 revertpref.setVisible(_revert);
737 public void argSetModified(Object modifiedElement, boolean b)
745 modifiedElements.remove(modifiedElement);
749 if (b && modifiedElement == setName
750 && modifiedElements.contains(modifiedElement))
752 // HACK! prevents iteration on makeSetNameValid
755 modifiedElements.put(modifiedElement, modifiedElement);
757 // set mod status based on presence of elements in table
758 if (b && modifiedElements.size() > 0)
760 makeSetNameValid(!isUserPreset);
761 SetNamePanel.revalidate();
763 updateButtonDisplay();
766 private boolean isServicePreset(String selectedItem)
768 return selectedItem.equals(SVC_DEF)
769 || servicePresets.containsKey(selectedItem);
773 * check if the current set name is a valid set name for saving, if not, then
776 private void makeSetNameValid(boolean newuserset)
778 boolean stn = settingDialog;
779 boolean renamed = false;
780 settingDialog = true;
781 String nm = (curSetName != null ? curSetName : (String) setName
783 // check if the name is reserved - if it is, rename it.
784 if (isServicePreset(nm))
793 while (paramStore.getPreset(tnm) != null)
795 tnm = nm + " (" + (++i) + ")";
804 boolean makeupdate = false;
805 // sync the gui with the preset database
806 for (int i = 0, iS = setName.getItemCount(); i < iS; i++)
808 String snm = (String) setName.getItemAt(i);
812 // setName.setSelectedIndex(i);
817 setName.addItem(curSetName = nm);
818 setName.setSelectedItem(curSetName);
822 settingDialog = false; // we need this name change to be registered.
823 argSetModified(setName, renamed);
828 public void refreshParamLayout()
830 // optsAndparams.setPreferredSize(null);
831 FlowLayout fl = new FlowLayout(FlowLayout.LEFT);
832 int sep = fl.getVgap();
834 int os = 0, s = jobOptions.getBorder().getBorderInsets(jobOptions).bottom
835 + jobOptions.getBorder().getBorderInsets(jobOptions).top
839 * final height for viewport
842 int panewidth = paramPane.getViewport().getSize().width - 120
843 - jobOptions.getBorder().getBorderInsets(jobOptions).left
844 + jobOptions.getBorder().getBorderInsets(jobOptions).right;
848 + (MAX_OPTWIDTH > OptsAndParamsPage.PARAM_WIDTH ? MAX_OPTWIDTH
849 : OptsAndParamsPage.PARAM_WIDTH);
850 int hgap = fl.getHgap(), cw = hgap;
852 if (opanp.getOptSet().size() > 0)
855 jobOptions.setLayout(new MigLayout("", "", ""));
856 jobOptions.removeAll();
858 for (OptionBox pbox : opanp.getOptSet().values())
861 cw += pbox.getSize().width + hgap;
862 if (cw + 120 > panewidth)
864 jobOptions.add(pbox, "wrap");
865 // System.out.println("Wrap on "+pbox.option.getName());
866 cw = hgap + pbox.getSize().width;
871 jobOptions.add(pbox);
875 finalh += pbox.getSize().height + fl.getVgap();
879 jobOptions.revalidate();
883 jobOptions.setVisible(false);
886 // Now layout the parameters assuming they occupy one column - to calculate
887 // total height of options+parameters
888 fl = new FlowLayout(FlowLayout.LEFT);
890 // http://stackoverflow.com/questions/2743177/top-alignment-for-flowlayout
891 fl.setAlignOnBaseline(true);
892 if (opanp.getParamSet().size() > 0)
894 paramList.removeAll();
895 paramList.setLayout(new MigLayout("", "", ""));
897 for (ParamBox pbox : opanp.getParamSet().values())
900 cw += pbox.getSize().width + hgap;
901 if (cw + 160 > panewidth)
903 paramList.add(pbox, "wrap");
904 cw = pbox.getSize().width + hgap;
913 finalh += pbox.getSize().height + fl.getVgap();
919 * s = 2 * sep; for (ParamBox pbox : opanp.getParamSet().values()) {
920 * pbox.validate(); s += sep +
921 * pbox.getPreferredSize().height+pbox.getBorder
922 * ().getBorderInsets(pbox).bottom; }
924 * // paramList.setPreferredSize(new Dimension(w, s));
925 * os+=s+2*sep+paramList
926 * .getBorder().getBorderInsets(paramList).bottom+paramList
927 * .getBorder().getBorderInsets(paramList).top;
929 paramList.revalidate();
933 paramList.setVisible(false);
935 // TODO: waste some time trying to eliminate any unnecessary .validate calls
937 // System.out.println("Size will be : "+w+","+os);
938 // optsAndparams.setPreferredSize(null);
939 // paramPane.getViewport().setView(optsAndparams);
940 paramPane.getViewport().setAutoscrolls(true);
941 paramPane.revalidate();
946 * testing method - grab a service and parameter set and show the window
950 public static void main(String[] args)
952 jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
957 Vector<String> services = new Vector<String>();
958 services.addElement(args[p++]);
959 Jws2Discoverer.getDiscoverer().setServiceUrls(services);
964 } catch (Exception e)
966 System.err.println("Aborting. Problem discovering services.");
970 Jws2Instance lastserv = null;
971 for (Jws2Instance service : disc.getServices())
974 if (p >= args.length || service.serviceType.equalsIgnoreCase(args[p]))
976 if (lastserv != null)
978 List<Preset> prl = null;
980 if (++p < args.length)
982 PresetManager prman = lastserv.getPresets();
985 pr = prman.getPresetByName(args[p]);
988 // just grab the last preset.
989 prl = prman.getPresets();
995 PresetManager prman = lastserv.getPresets();
998 prl = prman.getPresets();
1001 Iterator<Preset> en = (prl == null) ? null : prl.iterator();
1002 while (en != null && en.hasNext())
1008 en = prl.iterator();
1013 System.out.println("Testing opts dupes for "
1014 + lastserv.getUri() + " : "
1015 + lastserv.getActionText() + ":" + pr.getName());
1016 List<Option> rg = lastserv.getRunnerConfig().getOptions();
1021 Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
1022 } catch (Exception e)
1024 System.err.println("Failed to copy " + o.getName());
1025 e.printStackTrace();
1028 System.err.println("Failed to copy " + o.getName());
1029 e.printStackTrace();
1034 System.out.println("Testing param dupes:");
1035 List<Parameter> rg = lastserv.getRunnerConfig()
1037 for (Parameter o : rg)
1041 Parameter cpy = jalview.ws.jws2.ParameterUtils
1043 } catch (Exception e)
1045 System.err.println("Failed to copy " + o.getName());
1046 e.printStackTrace();
1049 System.err.println("Failed to copy " + o.getName());
1050 e.printStackTrace();
1055 System.out.println("Testing param write:");
1056 List<String> writeparam = null, readparam = null;
1059 writeparam = jalview.ws.jws2.ParameterUtils
1061 pr.getArguments(lastserv.getRunnerConfig()),
1063 System.out.println("Testing param read :");
1064 List<Option> pset = jalview.ws.jws2.ParameterUtils
1065 .processParameters(writeparam,
1066 lastserv.getRunnerConfig(), " ");
1067 readparam = jalview.ws.jws2.ParameterUtils
1068 .writeParameterSet(pset, " ");
1069 Iterator<String> o = pr.getOptions().iterator(), s = writeparam
1070 .iterator(), t = readparam.iterator();
1071 boolean failed = false;
1072 while (s.hasNext() && t.hasNext())
1074 String on = o.next(), sn = s.next(), st = t.next();
1077 System.out.println("Original was " + on
1078 + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
1085 System.out.println("Original parameters:\n"
1087 System.out.println("Wrote parameters in first set:\n"
1089 System.out.println("Wrote parameters in second set:\n"
1093 } catch (Exception e)
1095 e.printStackTrace();
1098 WsJobParameters pgui = new WsJobParameters(lastserv,
1099 new JabaPreset(lastserv, pr));
1100 JFrame jf = new JFrame(MessageManager.formatMessage(
1101 "label.ws_parameters_for", new String[]
1102 { lastserv.getActionText() }));
1103 JPanel cont = new JPanel(new BorderLayout());
1105 cont.setPreferredSize(pgui.getPreferredSize());
1106 cont.add(pgui, BorderLayout.CENTER);
1107 jf.setLayout(new BorderLayout());
1108 jf.add(cont, BorderLayout.CENTER);
1110 final Thread thr = Thread.currentThread();
1111 jf.addWindowListener(new WindowListener()
1114 public void windowActivated(WindowEvent e)
1116 // TODO Auto-generated method stub
1120 public void windowClosed(WindowEvent e)
1124 public void windowClosing(WindowEvent e)
1130 public void windowDeactivated(WindowEvent e)
1132 // TODO Auto-generated method stub
1136 public void windowDeiconified(WindowEvent e)
1138 // TODO Auto-generated method stub
1142 public void windowIconified(WindowEvent e)
1144 // TODO Auto-generated method stub
1148 public void windowOpened(WindowEvent e)
1150 // TODO Auto-generated method stub
1155 jf.setVisible(true);
1156 boolean inter = false;
1161 Thread.sleep(10000);
1162 } catch (Exception e)
1175 public boolean isServiceDefaults()
1177 return (!isModified() && (lastParmSet != null && lastParmSet
1181 public List<ArgumentI> getJobParams()
1183 return opanp.getCurrentSettings();
1186 String lastParmSet = null;
1189 * Hashtable<String, Object[]> editedParams = new Hashtable<String,
1192 * store the given parameters in the user parameter set database.
1194 * @param storeSetName - lastParmSet
1196 * @param descr - setDescr.getText()
1198 * @param jobParams - getJobParams()
1200 * private void _storeUserPreset(String storeSetName, String descr,
1201 * List<ArgumentI> jobParams) { // this is a simple hash store. Object[] pset;
1202 * editedParams.put(storeSetName, pset = new Object[3]); pset[0] =
1203 * storeSetName; pset[1] = descr; pset[2] = jobParams; // writeParam("Saving "
1204 * + storeSetName + ": ", jobParams); }
1206 * private void writeParam(String nm, List<ArgumentI> params) { for (ArgumentI
1207 * p : params) { System.out.println(nm + ":" + System.identityHashCode(p) +
1208 * " Name: " + p.getName() + " Value: " + p.getDefaultValue()); } }
1210 * private Object[] _getUserPreset(String setName) { Object[] pset =
1211 * editedParams.get(setName); // if (pset != null) // writeParam("Retrieving "
1212 * + setName + ": ", (List<Argument>) pset[2]); return pset; }
1214 * * remove the given user preset from the preset stash
1218 * private void _deleteUserPreset(String setName) {
1219 * editedParams.remove(setName); }
1222 private void syncSetNamesWithStore()
1225 // remove any set names in the drop down menu that aren't either a reserved
1226 // setting, or a user defined or service preset.
1227 Vector items = new Vector();
1228 while (n < setName.getItemCount())
1230 String item = (String) setName.getItemAt(n);
1231 if (!item.equals(SVC_DEF) && !paramStore.presetExists(item))
1233 setName.removeItemAt(n);
1237 items.addElement(item);
1241 if (!items.contains(SVC_DEF))
1243 setName.addItem(SVC_DEF);
1245 for (WsParamSetI upn : paramStore.getPresets())
1247 if (!items.contains(upn.getName()))
1249 setName.addItem(upn.getName());
1255 * true if lastParmSet is a user preset
1257 boolean isUserPreset = false;
1259 private void reInitDialog(String nextPreset)
1261 settingDialog = true;
1262 // updateTable(null,null); // first reset to defaults
1263 WsParamSetI pset = null;
1264 if (nextPreset != null && nextPreset.length() > 0)
1266 pset = paramStore.getPreset(nextPreset);
1270 if (pset.isModifiable())
1272 isUserPreset = true;
1273 setDescr.setText(pset.getDescription());
1274 updateTable(null, pset.getArguments());
1275 lastParmSet = nextPreset;
1279 isUserPreset = false;
1280 setDescr.setText("");
1281 // must be a default preset from service
1282 updateTable(pset, null);
1283 lastParmSet = nextPreset;
1288 isUserPreset = false;
1290 setDescr.setText("");
1291 updateTable(null, null);
1292 lastParmSet = SVC_DEF;
1295 initArgSetModified();
1296 syncSetNamesWithStore();
1297 setName.setSelectedItem(lastParmSet);
1298 SetNamePanel.validate();
1300 settingDialog = false;
1304 * Rebuild the AlignFrame web service menus (after add/delete of a preset
1307 protected void updateWebServiceMenus()
1309 for (AlignFrame alignFrame : Desktop.getAlignFrames())
1311 alignFrame.BuildWebServiceMenu();
1315 String curSetName = null;
1317 public void itemStateChanged(ItemEvent e)
1319 if (e.getSource() == setName && e.getStateChange() == e.SELECTED)
1321 final String setname = (String) setName.getSelectedItem();
1322 System.out.println("Item state changed for " + setname
1323 + " (handling ? " + !settingDialog + ")");
1329 if (setname == null)
1333 javax.swing.SwingUtilities.invokeLater(new Runnable()
1337 doPreferenceComboStateChange(setname);
1343 private void doPreferenceComboStateChange(String setname)
1345 // user has selected a different item from combo-box
1348 String lsetname = (curSetName != null) ? curSetName : lastParmSet;
1349 if (lsetname.equals(setname))
1351 // setname was just edited - so ignore this event.
1354 settingDialog = true;
1355 System.out.println("Prompting to save " + lsetname);
1356 if (javax.swing.JOptionPane
1361 + "' is modifed, and your changes will be lost.\nReally change preset ?",
1362 "Warning: Unsaved Changes",
1363 javax.swing.JOptionPane.OK_CANCEL_OPTION) != JOptionPane.OK_OPTION)
1365 // revert the combobox to the current item
1366 settingDialog = true;
1367 setName.setSelectedItem(lsetname);
1368 settingDialog = false;
1371 // System.out.println("Saving for " + lsetname);
1372 // _storeCurrentPreset(lsetname);
1376 settingDialog = true;
1377 reInitDialog(setname);
1378 settingDialog = false;
1382 private void _renameExistingPreset(String oldName, String curSetName2)
1384 paramStore.updatePreset(oldName, curSetName2, setDescr.getText(),
1389 * store current settings as given name. You should then reset gui.
1391 * @param curSetName2
1393 private void _storeCurrentPreset(String curSetName2)
1395 paramStore.storePreset(curSetName2, setDescr.getText(), getJobParams());
1398 private void _updatePreset(String lastParmSet2, String curname)
1400 paramStore.updatePreset(lastParmSet2, curname, setDescr.getText(),
1406 * last saved name for this user preset
1408 String lastSetName = null;
1411 * last saved value of the description text for this user preset
1413 String lastDescrText = null;
1415 public void actionPerformed(ActionEvent e)
1417 if (e.getSource() instanceof Component)
1419 Component src = (Component) e.getSource();
1420 if (src.getParent() == setName)
1422 // rename any existing records we know about for this set.
1423 String newname = e.getActionCommand().trim();
1425 if (isServicePreset(newname))
1427 final String oldname = curSetName != null ? curSetName
1429 final Component ourframe = this;
1430 settingDialog = true;
1431 setName.getEditor().setItem(oldname);
1432 settingDialog = false;
1433 javax.swing.SwingUtilities.invokeLater(new Runnable()
1437 JOptionPane.showMessageDialog(ourframe, MessageManager
1438 .getString("label.invalid_name_preset_exists"),
1439 MessageManager.getString("label.invalid_name"),
1440 JOptionPane.WARNING_MESSAGE);
1446 curSetName = newname;
1447 System.err.println("New name for user setting " + curSetName
1448 + " (was " + setName.getSelectedItem() + ")");
1449 if (curSetName.equals(setName.getSelectedItem()))
1453 if (curSetName != null)
1455 argSetModified(setName, true);
1463 private void checkDescrModified()
1470 (lastDescrText == null ? setDescr.getText().trim().length() > 0
1471 : !setDescr.getText().equals(lastDescrText)));
1476 public void insertUpdate(DocumentEvent e)
1478 checkDescrModified();
1481 public void removeUpdate(DocumentEvent e)
1483 checkDescrModified();
1486 public void changedUpdate(DocumentEvent e)
1488 checkDescrModified();
1493 * @return null or the service preset selected by the user
1495 public WsParamSetI getPreset()
1497 if (isUserPreset || isModified()
1498 || (lastParmSet != null && lastParmSet.equals(SVC_DEF)))
1504 return paramStore.getPreset(lastParmSet);