2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import jalview.gui.OptsAndParamsPage.OptionBox;
24 import jalview.gui.OptsAndParamsPage.ParamBox;
25 import jalview.util.MessageManager;
26 import jalview.ws.jws2.JabaParamStore;
27 import jalview.ws.jws2.JabaPreset;
28 import jalview.ws.jws2.Jws2Discoverer;
29 import jalview.ws.jws2.jabaws2.Jws2Instance;
30 import jalview.ws.params.ArgumentI;
31 import jalview.ws.params.OptionI;
32 import jalview.ws.params.ParamDatastoreI;
33 import jalview.ws.params.ParameterI;
34 import jalview.ws.params.WsParamSetI;
36 import java.awt.BorderLayout;
37 import java.awt.Component;
38 import java.awt.Dimension;
39 import java.awt.FlowLayout;
41 import java.awt.GridBagConstraints;
42 import java.awt.GridBagLayout;
43 import java.awt.GridLayout;
44 import java.awt.Rectangle;
45 import java.awt.event.ActionEvent;
46 import java.awt.event.ActionListener;
47 import java.awt.event.HierarchyBoundsListener;
48 import java.awt.event.HierarchyEvent;
49 import java.awt.event.ItemEvent;
50 import java.awt.event.ItemListener;
51 import java.awt.event.WindowEvent;
52 import java.awt.event.WindowListener;
54 import java.util.Hashtable;
55 import java.util.Iterator;
56 import java.util.List;
57 import java.util.Vector;
59 import javax.swing.JButton;
60 import javax.swing.JComboBox;
61 import javax.swing.JDialog;
62 import javax.swing.JFrame;
63 import javax.swing.JLabel;
64 import javax.swing.JOptionPane;
65 import javax.swing.JPanel;
66 import javax.swing.JScrollPane;
67 import javax.swing.JSplitPane;
68 import javax.swing.JTextArea;
69 import javax.swing.border.TitledBorder;
70 import javax.swing.event.DocumentEvent;
71 import javax.swing.event.DocumentListener;
73 import net.miginfocom.swing.MigLayout;
75 import compbio.metadata.Argument;
76 import compbio.metadata.Option;
77 import compbio.metadata.Parameter;
78 import compbio.metadata.Preset;
79 import compbio.metadata.PresetManager;
80 import compbio.metadata.RunnerConfig;
83 * job parameter editing/browsing dialog box. User can browse existing settings
84 * (user + presets + Defaults), and any changes to parameters creates a modified
85 * user parameter set. LOGIC: If the parameter set is modified, and its name is
86 * a valid, non-existant user parameter set, then a save button is shown. If the
87 * parameter set is modified and its name is a valid, extant user parameter set,
88 * then an update button is shown. If user parameter set's name is edited, and
89 * old name exists as a writable user parameter set, then rename button is
90 * shown. If current parameter set is associated with a user defined parameter
91 * set, then : if set is modifed, a 'revert' button is shown. if set is not
92 * modified, a 'delete' button is shown.
97 public class WsJobParameters extends JPanel implements ItemListener,
98 ActionListener, DocumentListener, OptsParametersContainerI
100 URL linkImageURL = getClass().getResource("/images/link.gif");
102 private static final String SVC_DEF = "Defaults"; // this is the null
103 // parameter set as shown to
107 * manager for options and parameters.
109 OptsAndParamsPage opanp = new OptsAndParamsPage(this);
112 * panel containing job options
114 JPanel jobOptions = new JPanel();
117 * panel containing job parameters
119 JPanel paramList = new JPanel();
121 JPanel SetNamePanel = new JPanel();
123 JPanel setDetails = new JPanel();
125 JSplitPane settingsPanel = new JSplitPane();
127 JPanel jobPanel = new JPanel();
129 JScrollPane jobOptionsPane = new JScrollPane();
131 JButton createpref = new JButton();
133 JButton deletepref = new JButton();
135 JButton revertpref = new JButton();
137 JButton updatepref = new JButton();
139 JButton startjob = new JButton();
141 JButton canceljob = new JButton();
143 JComboBox setName = new JComboBox();
145 JTextArea setDescr = new JTextArea();
147 JScrollPane paramPane = new JScrollPane();
149 // ScrollablePanel optsAndparams = new ScrollablePanel();
150 JPanel optsAndparams = new JPanel();
152 RunnerConfig serviceOptions;
154 ParamDatastoreI paramStore;
156 private int MAX_OPTWIDTH = 200;
158 WsJobParameters(Jws2Instance service)
163 public WsJobParameters(Jws2Instance service, WsParamSetI preset)
165 this(null, service, preset, null);
171 * - if null, create new JFrame outside of desktop
175 public WsJobParameters(JFrame parent, Jws2Instance service,
176 WsParamSetI preset, List<Argument> jobArgset)
178 this(parent, null, service, preset, jobArgset);
189 public WsJobParameters(JFrame parent, ParamDatastoreI paramStorei,
190 Jws2Instance service, WsParamSetI preset, List<Argument> jobArgset)
194 this.paramStore = paramStorei;
195 if (paramStore == null)
197 paramStore = service.getParamStore();
199 this.service = service;
200 // argSetModified(false);
201 // populate parameter table
202 initForService(service, preset, jobArgset);
203 // display in new JFrame attached to parent.
209 JDialog frame = null;
212 * shows a modal dialog containing the parameters.
216 public boolean showRunDialog()
219 frame = new JDialog(Desktop.instance, true);
221 frame.setTitle(MessageManager.formatMessage("label.edit_params_for",
223 { service.getActionText() }));
224 Rectangle deskr = Desktop.instance.getBounds();
225 Dimension pref = this.getPreferredSize();
226 frame.setBounds(new Rectangle(
227 (int) (deskr.getCenterX() - pref.width / 2), (int) (deskr
228 .getCenterY() - pref.height / 2), pref.width,
230 frame.setContentPane(this);
232 // should perhaps recover defaults from user prefs.
235 javax.swing.SwingUtilities.invokeLater(new Runnable()
239 // jobPanel.setDividerLocation(0.25);
243 frame.setVisible(true);
252 private void jbInit()
254 this.addHierarchyBoundsListener(new HierarchyBoundsListener()
258 public void ancestorResized(HierarchyEvent arg0)
260 refreshParamLayout();
264 public void ancestorMoved(HierarchyEvent arg0)
266 // TODO Auto-generated method stub
270 updatepref = JvSwingUtils.makeButton(
271 MessageManager.getString("action.update"),
272 MessageManager.getString("label.update_user_parameter_set"),
276 public void actionPerformed(ActionEvent e)
278 update_actionPerformed(e);
281 deletepref = JvSwingUtils.makeButton(
282 MessageManager.getString("action.delete"),
283 MessageManager.getString("label.delete_user_parameter_set"),
287 public void actionPerformed(ActionEvent e)
289 delete_actionPerformed(e);
292 createpref = JvSwingUtils.makeButton(
293 MessageManager.getString("action.create"),
294 MessageManager.getString("label.create_user_parameter_set"),
298 public void actionPerformed(ActionEvent e)
300 create_actionPerformed(e);
303 revertpref = JvSwingUtils.makeButton(MessageManager
304 .getString("action.revert"), MessageManager
305 .getString("label.revert_changes_user_parameter_set"),
309 public void actionPerformed(ActionEvent e)
311 revert_actionPerformed(e);
314 startjob = JvSwingUtils.makeButton(
315 MessageManager.getString("action.start_job"),
316 MessageManager.getString("label.start_job_current_settings"),
319 public void actionPerformed(ActionEvent e)
321 startjob_actionPerformed(e);
324 canceljob = JvSwingUtils.makeButton(
325 MessageManager.getString("action.cancel_job"),
326 MessageManager.getString("label.cancel_job_close_dialog"),
329 public void actionPerformed(ActionEvent e)
331 canceljob_actionPerformed(e);
335 setDetails.setBorder(new TitledBorder(MessageManager
336 .getString("label.details")));
337 setDetails.setLayout(new BorderLayout());
338 setDescr.setColumns(40);
339 setDescr.setWrapStyleWord(true);
340 setDescr.setLineWrap(true);
341 setDescr.setBackground(getBackground());
342 setDescr.setEditable(true);
343 setDescr.getDocument().addDocumentListener(this);
344 setDescr.setToolTipText(MessageManager
345 .getString("label.edit_notes_parameter_set"));
346 JScrollPane setDescrView = new JScrollPane();
347 setDescrView.getViewport().setView(setDescr);
348 setName.setEditable(true);
349 setName.addItemListener(this);
350 setName.getEditor().addActionListener(this);
351 JPanel setNameInfo = new JPanel(new FlowLayout(FlowLayout.LEFT));
352 GridBagLayout gbl = new GridBagLayout();
353 SetNamePanel.setLayout(gbl);
355 JLabel setNameLabel = new JLabel(
356 MessageManager.getString("label.current_parameter_set_name"));
357 setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
359 setNameInfo.add(setNameLabel);
360 setNameInfo.add(setName);
362 // initial button visibility
363 updatepref.setVisible(false);
364 deletepref.setVisible(false);
365 revertpref.setVisible(false);
366 createpref.setVisible(false);
367 JPanel setsavebuts = new JPanel();
368 setsavebuts.setLayout(new FlowLayout(FlowLayout.LEFT)); // GridLayout(1,2));
369 ((FlowLayout) setsavebuts.getLayout()).setHgap(10);
370 ((FlowLayout) setsavebuts.getLayout()).setVgap(0);
371 JPanel spacer = new JPanel();
372 spacer.setPreferredSize(new Dimension(2, 30));
373 setsavebuts.add(spacer);
374 setsavebuts.add(deletepref);
375 setsavebuts.add(revertpref);
376 setsavebuts.add(createpref);
377 setsavebuts.add(updatepref);
378 // setsavebuts.setSize(new Dimension(150, 30));
379 JPanel buttonArea = new JPanel(new GridLayout(1, 1));
380 buttonArea.add(setsavebuts);
381 SetNamePanel.add(setNameInfo);
382 GridBagConstraints gbc = new GridBagConstraints();
384 gbl.setConstraints(setNameInfo, gbc);
385 SetNamePanel.add(buttonArea);
386 gbc = new GridBagConstraints();
390 gbl.setConstraints(buttonArea, gbc);
391 setDetails.add(setDescrView, BorderLayout.CENTER);
393 // paramPane.setPreferredSize(new Dimension(360, 400));
394 // paramPane.setPreferredSize(null);
395 jobOptions.setBorder(new TitledBorder(MessageManager
396 .getString("label.options")));
397 jobOptions.setOpaque(true);
398 paramList.setBorder(new TitledBorder(MessageManager
399 .getString("label.parameters")));
400 paramList.setOpaque(true);
401 JPanel bjo = new JPanel(new BorderLayout()), bjp = new JPanel(
403 bjo.add(jobOptions, BorderLayout.CENTER);
404 bjp.add(paramList, BorderLayout.CENTER);
407 // optsAndparams.setScrollableWidth(ScrollableSizeHint.FIT);
408 // optsAndparams.setScrollableHeight(ScrollableSizeHint.NONE);
409 // optsAndparams.setLayout(new BorderLayout());
410 optsAndparams.setLayout(new BorderLayout());
411 optsAndparams.add(jobOptions, BorderLayout.NORTH);
412 optsAndparams.add(paramList, BorderLayout.CENTER);
413 JPanel jp = new JPanel(new BorderLayout());
414 jp.add(optsAndparams, BorderLayout.CENTER);
415 paramPane.getViewport().setView(jp);
416 paramPane.setBorder(null);
417 setLayout(new BorderLayout());
418 jobPanel.setPreferredSize(null);
419 jobPanel.setLayout(new BorderLayout());
420 jobPanel.add(setDetails, BorderLayout.NORTH);
421 jobPanel.add(paramPane, BorderLayout.CENTER);
422 // jobPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
424 add(SetNamePanel, BorderLayout.NORTH);
425 add(jobPanel, BorderLayout.CENTER);
427 JPanel dialogpanel = new JPanel();
428 dialogpanel.add(startjob);
429 dialogpanel.add(canceljob);
430 // JAL-1580: setMaximumSize() doesn't work, so just size for the worst case:
431 setPreferredSize(new Dimension(540, Desktop.instance.getHeight()));
432 add(dialogpanel, BorderLayout.SOUTH);
436 protected void revert_actionPerformed(ActionEvent e)
438 reInitDialog(lastParmSet);
442 protected void update_actionPerformed(ActionEvent e)
446 String curname = ((String) setName.getSelectedItem()).trim();
447 _updatePreset(lastParmSet, curname);
448 lastParmSet = curname;
450 initArgSetModified();
451 syncSetNamesWithStore();
455 private void _deleteUserPreset(String lastParmSet2)
457 paramStore.deletePreset(lastParmSet2);
460 protected void delete_actionPerformed(ActionEvent e)
464 // delete current preset's saved entry
465 _deleteUserPreset(lastParmSet);
467 reInitDialog(null); // service default
470 protected void create_actionPerformed(ActionEvent e)
472 String curname = ((String) setName.getSelectedItem()).trim();
473 if (curname.length() > 0)
475 _storeCurrentPreset(curname);
476 lastParmSet = curname;
478 initArgSetModified();
482 // TODO: show warning
483 System.err.println("Invalid name. Not saved.");
487 protected void canceljob_actionPerformed(ActionEvent e)
492 frame.setVisible(false);
496 protected void startjob_actionPerformed(ActionEvent e)
501 frame.setVisible(false);
505 Jws2Instance service;
508 * list of service presets in the gui
510 Hashtable servicePresets = null;
513 * set if dialog is being set - so handlers will avoid spurious events
515 boolean settingDialog = false;
517 void initForService(Jws2Instance service, WsParamSetI jabap,
518 List<Argument> jabajobArgset)
520 WsParamSetI p = null;
521 List<ArgumentI> jobArgset = null;
522 settingDialog = true;
523 { // instantiate the abstract proxy for Jaba objects
524 jobArgset = jabajobArgset == null ? null : JabaParamStore
525 .getJwsArgsfromJaba(jabajobArgset);
526 p = jabap; // (jabap != null) ? paramStore.getPreset(jabap.getName()) :
530 Hashtable exnames = new Hashtable();
531 for (int i = 0, iSize = setName.getItemCount(); i < iSize; i++)
533 exnames.put(setName.getItemAt(i), setName.getItemAt(i));
535 servicePresets = new Hashtable();
536 // Add the default entry - if not present already.
537 if (!exnames.contains(SVC_DEF))
539 setName.addItem(SVC_DEF);
540 exnames.put(SVC_DEF, SVC_DEF);
541 servicePresets.put(SVC_DEF, SVC_DEF);
543 String curname = (p == null ? "" : p.getName());
544 for (WsParamSetI pr : paramStore.getPresets())
546 if (!pr.isModifiable())
548 servicePresets.put(pr.getName(), "preset");
553 if (!exnames.contains(pr.getName()))
555 setName.addItem(pr.getName());
558 // TODO: if initial jobArgset matches a given user setting or preset then
559 // should recover setting accordingly
560 // updateTable(p, jobArgset);
563 reInitDialog(p.getName());
564 initArgSetModified();
568 if (jobArgset != null && jobArgset.size() > 0)
570 curSetName = "Supplied Settings";
571 isUserPreset = false;
572 updateTable(p, jobArgset);
573 setName.setSelectedItem(curSetName);
574 updateButtonDisplay();
582 settingDialog = false;
586 @SuppressWarnings("unchecked")
587 private void updateTable(WsParamSetI p, List<ArgumentI> jobArgset)
589 boolean setDefaultParams = false;
590 if (lastParmSet == null)
592 isUserPreset = false;
593 // First call - so provide Service default settings
594 setName.setSelectedItem(lastSetName = SVC_DEF);
596 if (p == null && SVC_DEF.equals("" + setName.getSelectedItem()))
598 // indicate that service defaults should be set if available
599 setDefaultParams = true;
601 // populate table from default parameter set.
602 List<ArgumentI> args = paramStore.getServiceParameters();
604 // split to params and required arguments
607 boolean optset = false;
608 for (ArgumentI myarg : args)
610 // Ideally, Argument would implement isRequired !
611 if (myarg instanceof ParameterI)
613 ParameterI parm = (ParameterI) myarg;
614 opanp.addParameter(parm).validate();
618 if (myarg instanceof OptionI)
620 OptionI opt = (OptionI) myarg;
621 OptionBox ob = opanp.addOption(opt);
622 ob.resetToDefault(setDefaultParams);
623 if (MAX_OPTWIDTH < ob.getPreferredSize().width)
625 MAX_OPTWIDTH = ob.getPreferredSize().width;
628 cw += ob.getPreferredSize().width + 5;
632 System.err.println("Ignoring unknown service argument type "
633 + myarg.getClass().getName());
637 args = null; // no more args to process.
641 isUserPreset = false;
642 // initialise setname
643 setName.setSelectedItem(lastSetName = p.getName());
644 setDescr.setText(lastDescrText = p.getDescription());
648 args = p.getArguments();
649 } catch (Exception e)
653 // TODO: check if args should be unselected prior to resetting using the
657 if (jobArgset != null)
659 argSetModified(jobArgset, true);
662 // get setargs from current object
665 for (ArgumentI arg : args)
667 if (arg instanceof ParameterI)
669 opanp.setParameter((ParameterI) arg);
673 if (arg instanceof OptionI)
675 // System.out.println("Setting option "
676 // + System.identityHashCode(arg) + ":" + arg.getName()
677 // + " with " + arg.getDefaultValue());
678 opanp.selectOption((OptionI) arg, arg.getValue());
685 refreshParamLayout();
689 private boolean isModified()
691 return modifiedElements.size() > 0;
694 private Hashtable modifiedElements = new Hashtable();
697 * reset gui and modification state settings
699 private void initArgSetModified()
702 modifiedElements.clear();
703 updateButtonDisplay();
706 private void updateButtonDisplay()
708 boolean _update = false, _create = false, _delete = false, _revert = false;
709 if (modifiedElements.size() > 0)
713 _update = isUserPreset; // can only update user presets
714 if (!isUserPreset || modifiedElements.containsKey(setName))
716 // name modified - can create new preset
724 // can still delete a user preset
725 _delete = isUserPreset;
727 createpref.setVisible(_create);
728 updatepref.setVisible(_update);
729 deletepref.setVisible(_delete);
730 revertpref.setVisible(_revert);
734 public void argSetModified(Object modifiedElement, boolean b)
742 modifiedElements.remove(modifiedElement);
746 if (b && modifiedElement == setName
747 && modifiedElements.contains(modifiedElement))
749 // HACK! prevents iteration on makeSetNameValid
752 modifiedElements.put(modifiedElement, modifiedElement);
754 // set mod status based on presence of elements in table
755 if (b && modifiedElements.size() > 0)
757 makeSetNameValid(!isUserPreset);
758 SetNamePanel.revalidate();
760 updateButtonDisplay();
763 private boolean isServicePreset(String selectedItem)
765 return selectedItem.equals(SVC_DEF)
766 || servicePresets.containsKey(selectedItem);
770 * check if the current set name is a valid set name for saving, if not, then
773 private void makeSetNameValid(boolean newuserset)
775 boolean stn = settingDialog;
776 boolean renamed = false;
777 settingDialog = true;
778 String nm = (curSetName != null ? curSetName : (String) setName
780 // check if the name is reserved - if it is, rename it.
781 if (isServicePreset(nm))
790 while (paramStore.getPreset(tnm) != null)
792 tnm = nm + " (" + (++i) + ")";
801 boolean makeupdate = false;
802 // sync the gui with the preset database
803 for (int i = 0, iS = setName.getItemCount(); i < iS; i++)
805 String snm = (String) setName.getItemAt(i);
809 // setName.setSelectedIndex(i);
814 setName.addItem(curSetName = nm);
815 setName.setSelectedItem(curSetName);
819 settingDialog = false; // we need this name change to be registered.
820 argSetModified(setName, renamed);
825 public void refreshParamLayout()
827 // optsAndparams.setPreferredSize(null);
828 FlowLayout fl = new FlowLayout(FlowLayout.LEFT);
829 int sep = fl.getVgap();
831 int os = 0, s = jobOptions.getBorder().getBorderInsets(jobOptions).bottom
832 + jobOptions.getBorder().getBorderInsets(jobOptions).top
836 * final height for viewport
839 int panewidth = paramPane.getViewport().getSize().width - 120
840 - jobOptions.getBorder().getBorderInsets(jobOptions).left
841 + jobOptions.getBorder().getBorderInsets(jobOptions).right;
845 + (MAX_OPTWIDTH > OptsAndParamsPage.PARAM_WIDTH ? MAX_OPTWIDTH
846 : OptsAndParamsPage.PARAM_WIDTH);
847 int hgap = fl.getHgap(), cw = hgap;
849 if (opanp.getOptSet().size() > 0)
852 jobOptions.setLayout(new MigLayout("", "", ""));
853 jobOptions.removeAll();
855 for (OptionBox pbox : opanp.getOptSet().values())
858 cw += pbox.getSize().width + hgap;
859 if (cw + 120 > panewidth)
861 jobOptions.add(pbox, "wrap");
862 // System.out.println("Wrap on "+pbox.option.getName());
863 cw = hgap + pbox.getSize().width;
868 jobOptions.add(pbox);
872 finalh += pbox.getSize().height + fl.getVgap();
876 jobOptions.revalidate();
880 jobOptions.setVisible(false);
883 // Now layout the parameters assuming they occupy one column - to calculate
884 // total height of options+parameters
885 fl = new FlowLayout(FlowLayout.LEFT);
887 // http://stackoverflow.com/questions/2743177/top-alignment-for-flowlayout
888 fl.setAlignOnBaseline(true);
889 if (opanp.getParamSet().size() > 0)
891 paramList.removeAll();
892 paramList.setLayout(new MigLayout("", "", ""));
894 for (ParamBox pbox : opanp.getParamSet().values())
897 cw += pbox.getSize().width + hgap;
898 if (cw + 160 > panewidth)
900 paramList.add(pbox, "wrap");
901 cw = pbox.getSize().width + hgap;
910 finalh += pbox.getSize().height + fl.getVgap();
916 * s = 2 * sep; for (ParamBox pbox : opanp.getParamSet().values()) {
917 * pbox.validate(); s += sep +
918 * pbox.getPreferredSize().height+pbox.getBorder
919 * ().getBorderInsets(pbox).bottom; }
921 * // paramList.setPreferredSize(new Dimension(w, s));
922 * os+=s+2*sep+paramList
923 * .getBorder().getBorderInsets(paramList).bottom+paramList
924 * .getBorder().getBorderInsets(paramList).top;
926 paramList.revalidate();
930 paramList.setVisible(false);
932 // TODO: waste some time trying to eliminate any unnecessary .validate calls
934 // System.out.println("Size will be : "+w+","+os);
935 // optsAndparams.setPreferredSize(null);
936 // paramPane.getViewport().setView(optsAndparams);
937 paramPane.getViewport().setAutoscrolls(true);
938 paramPane.revalidate();
943 * testing method - grab a service and parameter set and show the window
947 public static void main(String[] args)
949 jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
954 Vector<String> services = new Vector<String>();
955 services.addElement(args[p++]);
956 Jws2Discoverer.setServiceUrls(services);
961 } catch (Exception e)
963 System.err.println("Aborting. Problem discovering services.");
967 Jws2Instance lastserv = null;
968 for (Jws2Instance service : disc.getServices())
971 if (p >= args.length || service.serviceType.equalsIgnoreCase(args[p]))
973 if (lastserv != null)
975 List<Preset> prl = null;
977 if (++p < args.length)
979 PresetManager prman = lastserv.getPresets();
982 pr = prman.getPresetByName(args[p]);
985 // just grab the last preset.
986 prl = prman.getPresets();
992 PresetManager prman = lastserv.getPresets();
995 prl = prman.getPresets();
998 Iterator<Preset> en = (prl == null) ? null : prl.iterator();
999 while (en != null && en.hasNext())
1005 en = prl.iterator();
1010 System.out.println("Testing opts dupes for "
1011 + lastserv.getUri() + " : "
1012 + lastserv.getActionText() + ":" + pr.getName());
1013 List<Option> rg = lastserv.getRunnerConfig().getOptions();
1018 Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
1019 } catch (Exception e)
1021 System.err.println("Failed to copy " + o.getName());
1022 e.printStackTrace();
1025 System.err.println("Failed to copy " + o.getName());
1026 e.printStackTrace();
1031 System.out.println("Testing param dupes:");
1032 List<Parameter> rg = lastserv.getRunnerConfig()
1034 for (Parameter o : rg)
1038 Parameter cpy = jalview.ws.jws2.ParameterUtils
1040 } catch (Exception e)
1042 System.err.println("Failed to copy " + o.getName());
1043 e.printStackTrace();
1046 System.err.println("Failed to copy " + o.getName());
1047 e.printStackTrace();
1052 System.out.println("Testing param write:");
1053 List<String> writeparam = null, readparam = null;
1056 writeparam = jalview.ws.jws2.ParameterUtils
1058 pr.getArguments(lastserv.getRunnerConfig()),
1060 System.out.println("Testing param read :");
1061 List<Option> pset = jalview.ws.jws2.ParameterUtils
1062 .processParameters(writeparam,
1063 lastserv.getRunnerConfig(), " ");
1064 readparam = jalview.ws.jws2.ParameterUtils
1065 .writeParameterSet(pset, " ");
1066 Iterator<String> o = pr.getOptions().iterator(), s = writeparam
1067 .iterator(), t = readparam.iterator();
1068 boolean failed = false;
1069 while (s.hasNext() && t.hasNext())
1071 String on = o.next(), sn = s.next(), st = t.next();
1074 System.out.println("Original was " + on
1075 + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
1082 System.out.println("Original parameters:\n"
1084 System.out.println("Wrote parameters in first set:\n"
1086 System.out.println("Wrote parameters in second set:\n"
1090 } catch (Exception e)
1092 e.printStackTrace();
1095 WsJobParameters pgui = new WsJobParameters(lastserv,
1096 new JabaPreset(lastserv, pr));
1097 JFrame jf = new JFrame(MessageManager.formatMessage(
1098 "label.ws_parameters_for", new String[]
1099 { lastserv.getActionText() }));
1100 JPanel cont = new JPanel(new BorderLayout());
1102 cont.setPreferredSize(pgui.getPreferredSize());
1103 cont.add(pgui, BorderLayout.CENTER);
1104 jf.setLayout(new BorderLayout());
1105 jf.add(cont, BorderLayout.CENTER);
1107 final Thread thr = Thread.currentThread();
1108 jf.addWindowListener(new WindowListener()
1111 public void windowActivated(WindowEvent e)
1113 // TODO Auto-generated method stub
1117 public void windowClosed(WindowEvent e)
1121 public void windowClosing(WindowEvent e)
1127 public void windowDeactivated(WindowEvent e)
1129 // TODO Auto-generated method stub
1133 public void windowDeiconified(WindowEvent e)
1135 // TODO Auto-generated method stub
1139 public void windowIconified(WindowEvent e)
1141 // TODO Auto-generated method stub
1145 public void windowOpened(WindowEvent e)
1147 // TODO Auto-generated method stub
1152 jf.setVisible(true);
1153 boolean inter = false;
1158 Thread.sleep(10000);
1159 } catch (Exception e)
1172 public boolean isServiceDefaults()
1174 return (!isModified() && (lastParmSet != null && lastParmSet
1178 public List<ArgumentI> getJobParams()
1180 return opanp.getCurrentSettings();
1183 String lastParmSet = null;
1186 * Hashtable<String, Object[]> editedParams = new Hashtable<String,
1189 * store the given parameters in the user parameter set database.
1191 * @param storeSetName - lastParmSet
1193 * @param descr - setDescr.getText()
1195 * @param jobParams - getJobParams()
1197 * private void _storeUserPreset(String storeSetName, String descr,
1198 * List<ArgumentI> jobParams) { // this is a simple hash store. Object[] pset;
1199 * editedParams.put(storeSetName, pset = new Object[3]); pset[0] =
1200 * storeSetName; pset[1] = descr; pset[2] = jobParams; // writeParam("Saving "
1201 * + storeSetName + ": ", jobParams); }
1203 * private void writeParam(String nm, List<ArgumentI> params) { for (ArgumentI
1204 * p : params) { System.out.println(nm + ":" + System.identityHashCode(p) +
1205 * " Name: " + p.getName() + " Value: " + p.getDefaultValue()); } }
1207 * private Object[] _getUserPreset(String setName) { Object[] pset =
1208 * editedParams.get(setName); // if (pset != null) // writeParam("Retrieving "
1209 * + setName + ": ", (List<Argument>) pset[2]); return pset; }
1211 * * remove the given user preset from the preset stash
1215 * private void _deleteUserPreset(String setName) {
1216 * editedParams.remove(setName); }
1219 private void syncSetNamesWithStore()
1222 // remove any set names in the drop down menu that aren't either a reserved
1223 // setting, or a user defined or service preset.
1224 Vector items = new Vector();
1225 while (n < setName.getItemCount())
1227 String item = (String) setName.getItemAt(n);
1228 if (!item.equals(SVC_DEF) && !paramStore.presetExists(item))
1230 setName.removeItemAt(n);
1234 items.addElement(item);
1238 if (!items.contains(SVC_DEF))
1240 setName.addItem(SVC_DEF);
1242 for (WsParamSetI upn : paramStore.getPresets())
1244 if (!items.contains(upn.getName()))
1246 setName.addItem(upn.getName());
1252 * true if lastParmSet is a user preset
1254 boolean isUserPreset = false;
1256 private void reInitDialog(String nextPreset)
1258 settingDialog = true;
1259 // updateTable(null,null); // first reset to defaults
1260 WsParamSetI pset = null;
1261 if (nextPreset != null && nextPreset.length() > 0)
1263 pset = paramStore.getPreset(nextPreset);
1267 if (pset.isModifiable())
1269 isUserPreset = true;
1270 setDescr.setText(pset.getDescription());
1271 updateTable(null, pset.getArguments());
1272 lastParmSet = nextPreset;
1276 isUserPreset = false;
1277 setDescr.setText("");
1278 // must be a default preset from service
1279 updateTable(pset, null);
1280 lastParmSet = nextPreset;
1285 isUserPreset = false;
1287 setDescr.setText("");
1288 updateTable(null, null);
1289 lastParmSet = SVC_DEF;
1292 initArgSetModified();
1293 syncSetNamesWithStore();
1294 setName.setSelectedItem(lastParmSet);
1295 SetNamePanel.validate();
1297 settingDialog = false;
1301 String curSetName = null;
1303 public void itemStateChanged(ItemEvent e)
1305 if (e.getSource() == setName && e.getStateChange() == e.SELECTED)
1307 final String setname = (String) setName.getSelectedItem();
1308 System.out.println("Item state changed for " + setname
1309 + " (handling ? " + !settingDialog + ")");
1315 if (setname == null)
1319 javax.swing.SwingUtilities.invokeLater(new Runnable()
1323 doPreferenceComboStateChange(setname);
1329 private void doPreferenceComboStateChange(String setname)
1331 // user has selected a different item from combo-box
1334 String lsetname = (curSetName != null) ? curSetName : lastParmSet;
1335 if (lsetname.equals(setname))
1337 // setname was just edited - so ignore this event.
1340 settingDialog = true;
1341 System.out.println("Prompting to save " + lsetname);
1342 if (javax.swing.JOptionPane
1347 + "' is modifed, and your changes will be lost.\nReally change preset ?",
1348 "Warning: Unsaved Changes",
1349 javax.swing.JOptionPane.OK_CANCEL_OPTION) != JOptionPane.OK_OPTION)
1351 // revert the combobox to the current item
1352 settingDialog = true;
1353 setName.setSelectedItem(lsetname);
1354 settingDialog = false;
1357 // System.out.println("Saving for " + lsetname);
1358 // _storeCurrentPreset(lsetname);
1362 settingDialog = true;
1363 reInitDialog(setname);
1364 settingDialog = false;
1368 private void _renameExistingPreset(String oldName, String curSetName2)
1370 paramStore.updatePreset(oldName, curSetName2, setDescr.getText(),
1375 * store current settings as given name. You should then reset gui.
1377 * @param curSetName2
1379 private void _storeCurrentPreset(String curSetName2)
1381 paramStore.storePreset(curSetName2, setDescr.getText(), getJobParams());
1384 private void _updatePreset(String lastParmSet2, String curname)
1386 paramStore.updatePreset(lastParmSet2, curname, setDescr.getText(),
1392 * last saved name for this user preset
1394 String lastSetName = null;
1397 * last saved value of the description text for this user preset
1399 String lastDescrText = null;
1401 public void actionPerformed(ActionEvent e)
1403 if (e.getSource() instanceof Component)
1405 Component src = (Component) e.getSource();
1406 if (src.getParent() == setName)
1408 // rename any existing records we know about for this set.
1409 String newname = e.getActionCommand().trim();
1411 if (isServicePreset(newname))
1413 final String oldname = curSetName != null ? curSetName
1415 final Component ourframe = this;
1416 settingDialog = true;
1417 setName.getEditor().setItem(oldname);
1418 settingDialog = false;
1419 javax.swing.SwingUtilities.invokeLater(new Runnable()
1423 JOptionPane.showMessageDialog(ourframe, MessageManager
1424 .getString("label.invalid_name_preset_exists"),
1425 MessageManager.getString("label.invalid_name"),
1426 JOptionPane.WARNING_MESSAGE);
1432 curSetName = newname;
1433 System.err.println("New name for user setting " + curSetName
1434 + " (was " + setName.getSelectedItem() + ")");
1435 if (curSetName.equals(setName.getSelectedItem()))
1439 if (curSetName != null)
1441 argSetModified(setName, true);
1449 private void checkDescrModified()
1456 (lastDescrText == null ? setDescr.getText().trim().length() > 0
1457 : !setDescr.getText().equals(lastDescrText)));
1462 public void insertUpdate(DocumentEvent e)
1464 checkDescrModified();
1467 public void removeUpdate(DocumentEvent e)
1469 checkDescrModified();
1472 public void changedUpdate(DocumentEvent e)
1474 checkDescrModified();
1479 * @return null or the service preset selected by the user
1481 public WsParamSetI getPreset()
1483 if (isUserPreset || isModified()
1484 || (lastParmSet != null && lastParmSet.equals(SVC_DEF)))
1490 return paramStore.getPreset(lastParmSet);