2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import jalview.gui.OptsAndParamsPage.OptionBox;
24 import jalview.gui.OptsAndParamsPage.ParamBox;
25 import jalview.util.MessageManager;
26 import jalview.ws.jws2.JabaParamStore;
27 import jalview.ws.jws2.JabaPreset;
28 import jalview.ws.jws2.Jws2Discoverer;
29 import jalview.ws.jws2.ParameterUtils;
30 import jalview.ws.jws2.jabaws2.Jws2Instance;
31 import jalview.ws.params.ArgumentI;
32 import jalview.ws.params.OptionI;
33 import jalview.ws.params.ParamDatastoreI;
34 import jalview.ws.params.ParameterI;
35 import jalview.ws.params.WsParamSetI;
37 import java.awt.BorderLayout;
38 import java.awt.Component;
39 import java.awt.Dimension;
40 import java.awt.FlowLayout;
42 import java.awt.GridBagConstraints;
43 import java.awt.GridBagLayout;
44 import java.awt.GridLayout;
45 import java.awt.Rectangle;
46 import java.awt.event.ActionEvent;
47 import java.awt.event.ActionListener;
48 import java.awt.event.HierarchyBoundsListener;
49 import java.awt.event.HierarchyEvent;
50 import java.awt.event.ItemEvent;
51 import java.awt.event.ItemListener;
52 import java.awt.event.WindowEvent;
53 import java.awt.event.WindowListener;
55 import java.util.Hashtable;
56 import java.util.Iterator;
57 import java.util.List;
58 import java.util.Vector;
60 import javax.swing.JButton;
61 import javax.swing.JComboBox;
62 import javax.swing.JDialog;
63 import javax.swing.JFrame;
64 import javax.swing.JLabel;
65 import javax.swing.JOptionPane;
66 import javax.swing.JPanel;
67 import javax.swing.JScrollPane;
68 import javax.swing.JSplitPane;
69 import javax.swing.JTextArea;
70 import javax.swing.border.TitledBorder;
71 import javax.swing.event.DocumentEvent;
72 import javax.swing.event.DocumentListener;
74 import net.miginfocom.swing.MigLayout;
76 import compbio.metadata.Argument;
77 import compbio.metadata.Option;
78 import compbio.metadata.Parameter;
79 import compbio.metadata.Preset;
80 import compbio.metadata.PresetManager;
81 import compbio.metadata.RunnerConfig;
84 * job parameter editing/browsing dialog box. User can browse existing settings
85 * (user + presets + Defaults), and any changes to parameters creates a modified
86 * user parameter set. LOGIC: If the parameter set is modified, and its name is
87 * a valid, non-existant user parameter set, then a save button is shown. If the
88 * parameter set is modified and its name is a valid, extant user parameter set,
89 * then an update button is shown. If user parameter set's name is edited, and
90 * old name exists as a writable user parameter set, then rename button is
91 * shown. If current parameter set is associated with a user defined parameter
92 * set, then : if set is modifed, a 'revert' button is shown. if set is not
93 * modified, a 'delete' button is shown.
98 public class WsJobParameters extends JPanel implements ItemListener,
99 ActionListener, DocumentListener, OptsParametersContainerI
101 URL linkImageURL = getClass().getResource("/images/link.gif");
103 private static final String SVC_DEF = "Defaults"; // this is the null
104 // parameter set as shown to
108 * manager for options and parameters.
110 OptsAndParamsPage opanp = new OptsAndParamsPage(this);
113 * panel containing job options
115 JPanel jobOptions = new JPanel();
118 * panel containing job parameters
120 JPanel paramList = new JPanel();
122 JPanel SetNamePanel = new JPanel();
124 JPanel setDetails = new JPanel();
126 JSplitPane settingsPanel = new JSplitPane();
128 JPanel jobPanel = new JPanel();
130 JScrollPane jobOptionsPane = new JScrollPane();
132 JButton createpref = new JButton();
134 JButton deletepref = new JButton();
136 JButton revertpref = new JButton();
138 JButton updatepref = new JButton();
140 JButton startjob = new JButton();
142 JButton canceljob = new JButton();
144 JComboBox setName = new JComboBox();
146 JTextArea setDescr = new JTextArea();
148 JScrollPane paramPane = new JScrollPane();
150 // ScrollablePanel optsAndparams = new ScrollablePanel();
151 JPanel optsAndparams = new JPanel();
153 RunnerConfig serviceOptions;
155 ParamDatastoreI paramStore;
157 private int MAX_OPTWIDTH = 200;
159 WsJobParameters(Jws2Instance service)
164 public WsJobParameters(Jws2Instance service, WsParamSetI preset)
166 this(null, service, preset, null);
172 * - if null, create new JFrame outside of desktop
176 public WsJobParameters(JFrame parent, Jws2Instance service,
177 WsParamSetI preset, List<Argument> jobArgset)
179 this(parent, null, service, preset, jobArgset);
190 public WsJobParameters(JFrame parent, ParamDatastoreI paramStorei,
191 Jws2Instance service, WsParamSetI preset, List<Argument> jobArgset)
195 this.paramStore = paramStorei;
196 if (paramStore == null)
198 paramStore = service.getParamStore();
200 this.service = service;
201 // argSetModified(false);
202 // populate parameter table
203 initForService(service, preset, jobArgset);
204 // display in new JFrame attached to parent.
210 JDialog frame = null;
213 * shows a modal dialog containing the parameters.
217 public boolean showRunDialog()
220 frame = new JDialog(Desktop.instance, true);
222 frame.setTitle(MessageManager.formatMessage("label.edit_params_for",
224 { service.getActionText() }));
225 Rectangle deskr = Desktop.instance.getBounds();
226 Dimension pref = this.getPreferredSize();
227 frame.setBounds(new Rectangle(
228 (int) (deskr.getCenterX() - pref.width / 2), (int) (deskr
229 .getCenterY() - pref.height / 2), pref.width,
231 frame.setContentPane(this);
233 // should perhaps recover defaults from user prefs.
236 javax.swing.SwingUtilities.invokeLater(new Runnable()
240 // jobPanel.setDividerLocation(0.25);
244 frame.setVisible(true);
253 private void jbInit()
255 this.addHierarchyBoundsListener(new HierarchyBoundsListener()
259 public void ancestorResized(HierarchyEvent arg0)
261 refreshParamLayout();
265 public void ancestorMoved(HierarchyEvent arg0)
267 // TODO Auto-generated method stub
271 updatepref = JvSwingUtils.makeButton(
272 MessageManager.getString("action.update"),
273 MessageManager.getString("label.update_user_parameter_set"),
277 public void actionPerformed(ActionEvent e)
279 update_actionPerformed(e);
282 deletepref = JvSwingUtils.makeButton(
283 MessageManager.getString("action.delete"),
284 MessageManager.getString("label.delete_user_parameter_set"),
288 public void actionPerformed(ActionEvent e)
290 delete_actionPerformed(e);
293 createpref = JvSwingUtils.makeButton(
294 MessageManager.getString("action.create"),
295 MessageManager.getString("label.create_user_parameter_set"),
299 public void actionPerformed(ActionEvent e)
301 create_actionPerformed(e);
304 revertpref = JvSwingUtils.makeButton(MessageManager
305 .getString("action.revert"), MessageManager
306 .getString("label.revert_changes_user_parameter_set"),
310 public void actionPerformed(ActionEvent e)
312 revert_actionPerformed(e);
315 startjob = JvSwingUtils.makeButton(
316 MessageManager.getString("action.start_job"),
317 MessageManager.getString("label.start_job_current_settings"),
320 public void actionPerformed(ActionEvent e)
322 startjob_actionPerformed(e);
325 canceljob = JvSwingUtils.makeButton(
326 MessageManager.getString("action.cancel_job"),
327 MessageManager.getString("label.cancel_job_close_dialog"),
330 public void actionPerformed(ActionEvent e)
332 canceljob_actionPerformed(e);
336 setDetails.setBorder(new TitledBorder(MessageManager
337 .getString("label.details")));
338 setDetails.setLayout(new BorderLayout());
339 setDescr.setColumns(40);
340 setDescr.setWrapStyleWord(true);
341 setDescr.setLineWrap(true);
342 setDescr.setBackground(getBackground());
343 setDescr.setEditable(true);
344 setDescr.getDocument().addDocumentListener(this);
345 setDescr.setToolTipText(MessageManager
346 .getString("label.edit_notes_parameter_set"));
347 JScrollPane setDescrView = new JScrollPane();
348 setDescrView.getViewport().setView(setDescr);
349 setName.setEditable(true);
350 setName.addItemListener(this);
351 setName.getEditor().addActionListener(this);
352 JPanel setNameInfo = new JPanel(new FlowLayout(FlowLayout.LEFT));
353 GridBagLayout gbl = new GridBagLayout();
354 SetNamePanel.setLayout(gbl);
356 JLabel setNameLabel = new JLabel(
357 MessageManager.getString("label.current_parameter_set_name"));
358 setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
360 setNameInfo.add(setNameLabel);
361 setNameInfo.add(setName);
363 // initial button visibility
364 updatepref.setVisible(false);
365 deletepref.setVisible(false);
366 revertpref.setVisible(false);
367 createpref.setVisible(false);
368 JPanel setsavebuts = new JPanel();
369 setsavebuts.setLayout(new FlowLayout(FlowLayout.LEFT)); // GridLayout(1,2));
370 ((FlowLayout) setsavebuts.getLayout()).setHgap(10);
371 ((FlowLayout) setsavebuts.getLayout()).setVgap(0);
372 JPanel spacer = new JPanel();
373 spacer.setPreferredSize(new Dimension(2, 30));
374 setsavebuts.add(spacer);
375 setsavebuts.add(deletepref);
376 setsavebuts.add(revertpref);
377 setsavebuts.add(createpref);
378 setsavebuts.add(updatepref);
379 // setsavebuts.setSize(new Dimension(150, 30));
380 JPanel buttonArea = new JPanel(new GridLayout(1, 1));
381 buttonArea.add(setsavebuts);
382 SetNamePanel.add(setNameInfo);
383 GridBagConstraints gbc = new GridBagConstraints();
385 gbl.setConstraints(setNameInfo, gbc);
386 SetNamePanel.add(buttonArea);
387 gbc = new GridBagConstraints();
391 gbl.setConstraints(buttonArea, gbc);
392 setDetails.add(setDescrView, BorderLayout.CENTER);
394 // paramPane.setPreferredSize(new Dimension(360, 400));
395 // paramPane.setPreferredSize(null);
396 jobOptions.setBorder(new TitledBorder(MessageManager
397 .getString("label.options")));
398 jobOptions.setOpaque(true);
399 paramList.setBorder(new TitledBorder(MessageManager
400 .getString("label.parameters")));
401 paramList.setOpaque(true);
402 JPanel bjo = new JPanel(new BorderLayout()), bjp = new JPanel(
404 bjo.add(jobOptions, BorderLayout.CENTER);
405 bjp.add(paramList, BorderLayout.CENTER);
408 // optsAndparams.setScrollableWidth(ScrollableSizeHint.FIT);
409 // optsAndparams.setScrollableHeight(ScrollableSizeHint.NONE);
410 // optsAndparams.setLayout(new BorderLayout());
411 optsAndparams.setLayout(new BorderLayout());
412 optsAndparams.add(jobOptions, BorderLayout.NORTH);
413 optsAndparams.add(paramList, BorderLayout.CENTER);
414 JPanel jp = new JPanel(new BorderLayout());
415 jp.add(optsAndparams, BorderLayout.CENTER);
416 paramPane.getViewport().setView(jp);
417 paramPane.setBorder(null);
418 setLayout(new BorderLayout());
419 jobPanel.setPreferredSize(null);
420 jobPanel.setLayout(new BorderLayout());
421 jobPanel.add(setDetails, BorderLayout.NORTH);
422 jobPanel.add(paramPane, BorderLayout.CENTER);
423 // jobPanel.setOrientation(JSplitPane.VERTICAL_SPLIT);
425 add(SetNamePanel, BorderLayout.NORTH);
426 add(jobPanel, BorderLayout.CENTER);
428 JPanel dialogpanel = new JPanel();
429 dialogpanel.add(startjob);
430 dialogpanel.add(canceljob);
431 // JAL-1580: setMaximumSize() doesn't work, so just size for the worst case:
432 // check for null is for JUnit usage
433 final int windowHeight = Desktop.instance == null ? 540
434 : Desktop.instance.getHeight();
435 setPreferredSize(new Dimension(540, windowHeight));
436 add(dialogpanel, BorderLayout.SOUTH);
440 protected void revert_actionPerformed(ActionEvent e)
442 reInitDialog(lastParmSet);
443 updateWebServiceMenus();
446 protected void update_actionPerformed(ActionEvent e)
450 String curname = ((String) setName.getSelectedItem()).trim();
451 _updatePreset(lastParmSet, curname);
452 lastParmSet = curname;
454 initArgSetModified();
455 syncSetNamesWithStore();
459 private void _deleteUserPreset(String lastParmSet2)
461 paramStore.deletePreset(lastParmSet2);
464 protected void delete_actionPerformed(ActionEvent e)
468 // delete current preset's saved entry
469 _deleteUserPreset(lastParmSet);
471 reInitDialog(null); // service default
472 updateWebServiceMenus();
475 protected void create_actionPerformed(ActionEvent e)
477 String curname = ((String) setName.getSelectedItem()).trim();
478 if (curname.length() > 0)
480 _storeCurrentPreset(curname);
481 lastParmSet = curname;
483 reInitDialog(curname);
484 initArgSetModified();
485 updateWebServiceMenus();
489 // TODO: show warning
490 System.err.println("Invalid name. Not saved.");
494 protected void canceljob_actionPerformed(ActionEvent e)
499 frame.setVisible(false);
503 protected void startjob_actionPerformed(ActionEvent e)
508 frame.setVisible(false);
512 Jws2Instance service;
515 * list of service presets in the gui
517 Hashtable servicePresets = null;
520 * set if dialog is being set - so handlers will avoid spurious events
522 boolean settingDialog = false;
524 void initForService(Jws2Instance service, WsParamSetI jabap,
525 List<Argument> jabajobArgset)
527 WsParamSetI p = null;
528 List<ArgumentI> jobArgset = null;
529 settingDialog = true;
530 { // instantiate the abstract proxy for Jaba objects
531 jobArgset = jabajobArgset == null ? null : JabaParamStore
532 .getJwsArgsfromJaba(jabajobArgset);
533 p = jabap; // (jabap != null) ? paramStore.getPreset(jabap.getName()) :
537 Hashtable exnames = new Hashtable();
538 for (int i = 0, iSize = setName.getItemCount(); i < iSize; i++)
540 exnames.put(setName.getItemAt(i), setName.getItemAt(i));
542 servicePresets = new Hashtable();
543 // Add the default entry - if not present already.
544 if (!exnames.contains(SVC_DEF))
546 setName.addItem(SVC_DEF);
547 exnames.put(SVC_DEF, SVC_DEF);
548 servicePresets.put(SVC_DEF, SVC_DEF);
550 String curname = (p == null ? "" : p.getName());
551 for (WsParamSetI pr : paramStore.getPresets())
553 if (!pr.isModifiable())
555 servicePresets.put(pr.getName(), "preset");
560 if (!exnames.contains(pr.getName()))
562 setName.addItem(pr.getName());
565 // TODO: if initial jobArgset matches a given user setting or preset then
566 // should recover setting accordingly
567 // updateTable(p, jobArgset);
570 reInitDialog(p.getName());
571 initArgSetModified();
575 if (jobArgset != null && jobArgset.size() > 0)
577 curSetName = "Supplied Settings";
578 isUserPreset = false;
579 updateTable(p, jobArgset);
580 setName.setSelectedItem(curSetName);
581 updateButtonDisplay();
589 settingDialog = false;
593 @SuppressWarnings("unchecked")
594 private void updateTable(WsParamSetI p, List<ArgumentI> jobArgset)
596 boolean setDefaultParams = false;
597 if (lastParmSet == null)
599 isUserPreset = false;
600 // First call - so provide Service default settings
601 setName.setSelectedItem(lastSetName = SVC_DEF);
603 if (p == null && SVC_DEF.equals("" + setName.getSelectedItem()))
605 // indicate that service defaults should be set if available
606 setDefaultParams = true;
608 // populate table from default parameter set.
609 List<ArgumentI> args = paramStore.getServiceParameters();
611 // split to params and required arguments
614 boolean optset = false;
615 for (ArgumentI myarg : args)
617 // Ideally, Argument would implement isRequired !
618 if (myarg instanceof ParameterI)
620 ParameterI parm = (ParameterI) myarg;
621 opanp.addParameter(parm).validate();
625 if (myarg instanceof OptionI)
627 OptionI opt = (OptionI) myarg;
628 OptionBox ob = opanp.addOption(opt);
629 ob.resetToDefault(setDefaultParams);
630 if (MAX_OPTWIDTH < ob.getPreferredSize().width)
632 MAX_OPTWIDTH = ob.getPreferredSize().width;
635 cw += ob.getPreferredSize().width + 5;
639 System.err.println("Ignoring unknown service argument type "
640 + myarg.getClass().getName());
644 args = null; // no more args to process.
648 isUserPreset = false;
649 // initialise setname
650 setName.setSelectedItem(lastSetName = p.getName());
651 setDescr.setText(lastDescrText = p.getDescription());
655 args = p.getArguments();
656 } catch (Exception e)
660 // TODO: check if args should be unselected prior to resetting using the
664 if (jobArgset != null)
666 argSetModified(jobArgset, true);
669 // get setargs from current object
672 for (ArgumentI arg : args)
674 if (arg instanceof ParameterI)
676 opanp.setParameter((ParameterI) arg);
680 if (arg instanceof OptionI)
682 // System.out.println("Setting option "
683 // + System.identityHashCode(arg) + ":" + arg.getName()
684 // + " with " + arg.getDefaultValue());
685 opanp.selectOption((OptionI) arg, arg.getValue());
692 refreshParamLayout();
696 private boolean isModified()
698 return modifiedElements.size() > 0;
701 private Hashtable modifiedElements = new Hashtable();
704 * reset gui and modification state settings
706 private void initArgSetModified()
709 modifiedElements.clear();
710 updateButtonDisplay();
713 private void updateButtonDisplay()
715 boolean _update = false, _create = false, _delete = false, _revert = false;
716 if (modifiedElements.size() > 0)
720 _update = isUserPreset; // can only update user presets
721 if (!isUserPreset || modifiedElements.containsKey(setName))
723 // name modified - can create new preset
731 // can still delete a user preset
732 _delete = isUserPreset;
734 createpref.setVisible(_create);
735 updatepref.setVisible(_update);
736 deletepref.setVisible(_delete);
737 revertpref.setVisible(_revert);
741 public void argSetModified(Object modifiedElement, boolean b)
749 modifiedElements.remove(modifiedElement);
753 if (b && modifiedElement == setName
754 && modifiedElements.contains(modifiedElement))
756 // HACK! prevents iteration on makeSetNameValid
759 modifiedElements.put(modifiedElement, modifiedElement);
761 // set mod status based on presence of elements in table
762 if (b && modifiedElements.size() > 0)
764 makeSetNameValid(!isUserPreset);
765 SetNamePanel.revalidate();
767 updateButtonDisplay();
770 private boolean isServicePreset(String selectedItem)
772 return selectedItem.equals(SVC_DEF)
773 || servicePresets.containsKey(selectedItem);
777 * check if the current set name is a valid set name for saving, if not, then
780 private void makeSetNameValid(boolean newuserset)
782 boolean stn = settingDialog;
783 boolean renamed = false;
784 settingDialog = true;
785 String nm = (curSetName != null ? curSetName : (String) setName
787 // check if the name is reserved - if it is, rename it.
788 if (isServicePreset(nm))
797 while (paramStore.getPreset(tnm) != null)
799 tnm = nm + " (" + (++i) + ")";
808 boolean makeupdate = false;
809 // sync the gui with the preset database
810 for (int i = 0, iS = setName.getItemCount(); i < iS; i++)
812 String snm = (String) setName.getItemAt(i);
816 // setName.setSelectedIndex(i);
821 setName.addItem(curSetName = nm);
822 setName.setSelectedItem(curSetName);
826 settingDialog = false; // we need this name change to be registered.
827 argSetModified(setName, renamed);
832 public void refreshParamLayout()
834 // optsAndparams.setPreferredSize(null);
835 FlowLayout fl = new FlowLayout(FlowLayout.LEFT);
836 int sep = fl.getVgap();
838 int os = 0, s = jobOptions.getBorder().getBorderInsets(jobOptions).bottom
839 + jobOptions.getBorder().getBorderInsets(jobOptions).top
843 * final height for viewport
846 int panewidth = paramPane.getViewport().getSize().width - 120
847 - jobOptions.getBorder().getBorderInsets(jobOptions).left
848 + jobOptions.getBorder().getBorderInsets(jobOptions).right;
852 + (MAX_OPTWIDTH > OptsAndParamsPage.PARAM_WIDTH ? MAX_OPTWIDTH
853 : OptsAndParamsPage.PARAM_WIDTH);
854 int hgap = fl.getHgap(), cw = hgap;
856 if (opanp.getOptSet().size() > 0)
859 jobOptions.setLayout(new MigLayout("", "", ""));
860 jobOptions.removeAll();
862 for (OptionBox pbox : opanp.getOptSet().values())
865 cw += pbox.getSize().width + hgap;
866 if (cw + 120 > panewidth)
868 jobOptions.add(pbox, "wrap");
869 // System.out.println("Wrap on "+pbox.option.getName());
870 cw = hgap + pbox.getSize().width;
875 jobOptions.add(pbox);
879 finalh += pbox.getSize().height + fl.getVgap();
883 jobOptions.revalidate();
887 jobOptions.setVisible(false);
890 // Now layout the parameters assuming they occupy one column - to calculate
891 // total height of options+parameters
892 fl = new FlowLayout(FlowLayout.LEFT);
894 // http://stackoverflow.com/questions/2743177/top-alignment-for-flowlayout
895 fl.setAlignOnBaseline(true);
896 if (opanp.getParamSet().size() > 0)
898 paramList.removeAll();
899 paramList.setLayout(new MigLayout("", "", ""));
901 for (ParamBox pbox : opanp.getParamSet().values())
904 cw += pbox.getSize().width + hgap;
905 if (cw + 160 > panewidth)
907 paramList.add(pbox, "wrap");
908 cw = pbox.getSize().width + hgap;
917 finalh += pbox.getSize().height + fl.getVgap();
923 * s = 2 * sep; for (ParamBox pbox : opanp.getParamSet().values()) {
924 * pbox.validate(); s += sep +
925 * pbox.getPreferredSize().height+pbox.getBorder
926 * ().getBorderInsets(pbox).bottom; }
928 * // paramList.setPreferredSize(new Dimension(w, s));
929 * os+=s+2*sep+paramList
930 * .getBorder().getBorderInsets(paramList).bottom+paramList
931 * .getBorder().getBorderInsets(paramList).top;
933 paramList.revalidate();
937 paramList.setVisible(false);
939 // TODO: waste some time trying to eliminate any unnecessary .validate calls
941 // System.out.println("Size will be : "+w+","+os);
942 // optsAndparams.setPreferredSize(null);
943 // paramPane.getViewport().setView(optsAndparams);
944 paramPane.getViewport().setAutoscrolls(true);
945 paramPane.revalidate();
950 * testing method - grab a service and parameter set and show the window
954 public static void main(String[] args)
956 Jws2Discoverer disc = Jws2Discoverer.getDiscoverer();
960 Vector<String> services = new Vector<String>();
961 services.addElement(args[p++]);
962 Jws2Discoverer.getDiscoverer().setServiceUrls(services);
967 } catch (Exception e)
969 System.err.println("Aborting. Problem discovering services.");
973 Jws2Instance lastserv = null;
974 for (Jws2Instance service : disc.getServices())
977 if (p >= args.length || service.serviceType.equalsIgnoreCase(args[p]))
979 if (lastserv != null)
981 List<Preset> prl = null;
983 if (++p < args.length)
985 PresetManager prman = lastserv.getPresets();
988 pr = prman.getPresetByName(args[p]);
991 // just grab the last preset.
992 prl = prman.getPresets();
998 PresetManager prman = lastserv.getPresets();
1001 prl = prman.getPresets();
1004 Iterator<Preset> en = (prl == null) ? null : prl.iterator();
1005 while (en != null && en.hasNext())
1011 en = prl.iterator();
1016 System.out.println("Testing opts dupes for "
1017 + lastserv.getUri() + " : "
1018 + lastserv.getActionText() + ":" + pr.getName());
1019 List<Option> rg = lastserv.getRunnerConfig().getOptions();
1024 Option cpy = ParameterUtils.copyOption(o);
1025 } catch (Exception e)
1027 System.err.println("Failed to copy " + o.getName());
1028 e.printStackTrace();
1031 System.err.println("Failed to copy " + o.getName());
1032 e.printStackTrace();
1037 System.out.println("Testing param dupes:");
1038 List<Parameter> rg = lastserv.getRunnerConfig()
1040 for (Parameter o : rg)
1044 Parameter cpy = ParameterUtils
1046 } catch (Exception e)
1048 System.err.println("Failed to copy " + o.getName());
1049 e.printStackTrace();
1052 System.err.println("Failed to copy " + o.getName());
1053 e.printStackTrace();
1058 System.out.println("Testing param write:");
1059 List<String> writeparam = null, readparam = null;
1062 writeparam = ParameterUtils
1064 pr.getArguments(lastserv.getRunnerConfig()),
1066 System.out.println("Testing param read :");
1067 List<Option> pset = ParameterUtils
1068 .processParameters(writeparam,
1069 lastserv.getRunnerConfig(), " ");
1070 readparam = ParameterUtils
1071 .writeParameterSet(pset, " ");
1072 Iterator<String> o = pr.getOptions().iterator(), s = writeparam
1073 .iterator(), t = readparam.iterator();
1074 boolean failed = false;
1075 while (s.hasNext() && t.hasNext())
1077 String on = o.next(), sn = s.next(), st = t.next();
1080 System.out.println("Original was " + on
1081 + " Phase 1 wrote " + sn + "\tPhase 2 wrote "
1088 System.out.println("Original parameters:\n"
1090 System.out.println("Wrote parameters in first set:\n"
1092 System.out.println("Wrote parameters in second set:\n"
1096 } catch (Exception e)
1098 e.printStackTrace();
1101 WsJobParameters pgui = new WsJobParameters(lastserv,
1102 new JabaPreset(lastserv, pr));
1103 JFrame jf = new JFrame(MessageManager.formatMessage(
1104 "label.ws_parameters_for", new String[]
1105 { lastserv.getActionText() }));
1106 JPanel cont = new JPanel(new BorderLayout());
1108 cont.setPreferredSize(pgui.getPreferredSize());
1109 cont.add(pgui, BorderLayout.CENTER);
1110 jf.setLayout(new BorderLayout());
1111 jf.add(cont, BorderLayout.CENTER);
1113 final Thread thr = Thread.currentThread();
1114 jf.addWindowListener(new WindowListener()
1117 public void windowActivated(WindowEvent e)
1119 // TODO Auto-generated method stub
1123 public void windowClosed(WindowEvent e)
1127 public void windowClosing(WindowEvent e)
1133 public void windowDeactivated(WindowEvent e)
1135 // TODO Auto-generated method stub
1139 public void windowDeiconified(WindowEvent e)
1141 // TODO Auto-generated method stub
1145 public void windowIconified(WindowEvent e)
1147 // TODO Auto-generated method stub
1151 public void windowOpened(WindowEvent e)
1153 // TODO Auto-generated method stub
1158 jf.setVisible(true);
1159 boolean inter = false;
1164 Thread.sleep(10000);
1165 } catch (Exception e)
1178 public boolean isServiceDefaults()
1180 return (!isModified() && (lastParmSet != null && lastParmSet
1184 public List<ArgumentI> getJobParams()
1186 return opanp.getCurrentSettings();
1189 String lastParmSet = null;
1192 * Hashtable<String, Object[]> editedParams = new Hashtable<String,
1195 * store the given parameters in the user parameter set database.
1197 * @param storeSetName - lastParmSet
1199 * @param descr - setDescr.getText()
1201 * @param jobParams - getJobParams()
1203 * private void _storeUserPreset(String storeSetName, String descr,
1204 * List<ArgumentI> jobParams) { // this is a simple hash store. Object[] pset;
1205 * editedParams.put(storeSetName, pset = new Object[3]); pset[0] =
1206 * storeSetName; pset[1] = descr; pset[2] = jobParams; // writeParam("Saving "
1207 * + storeSetName + ": ", jobParams); }
1209 * private void writeParam(String nm, List<ArgumentI> params) { for (ArgumentI
1210 * p : params) { System.out.println(nm + ":" + System.identityHashCode(p) +
1211 * " Name: " + p.getName() + " Value: " + p.getDefaultValue()); } }
1213 * private Object[] _getUserPreset(String setName) { Object[] pset =
1214 * editedParams.get(setName); // if (pset != null) // writeParam("Retrieving "
1215 * + setName + ": ", (List<Argument>) pset[2]); return pset; }
1217 * * remove the given user preset from the preset stash
1221 * private void _deleteUserPreset(String setName) {
1222 * editedParams.remove(setName); }
1225 private void syncSetNamesWithStore()
1228 // remove any set names in the drop down menu that aren't either a reserved
1229 // setting, or a user defined or service preset.
1230 Vector items = new Vector();
1231 while (n < setName.getItemCount())
1233 String item = (String) setName.getItemAt(n);
1234 if (!item.equals(SVC_DEF) && !paramStore.presetExists(item))
1236 setName.removeItemAt(n);
1240 items.addElement(item);
1244 if (!items.contains(SVC_DEF))
1246 setName.addItem(SVC_DEF);
1248 for (WsParamSetI upn : paramStore.getPresets())
1250 if (!items.contains(upn.getName()))
1252 setName.addItem(upn.getName());
1258 * true if lastParmSet is a user preset
1260 boolean isUserPreset = false;
1262 private void reInitDialog(String nextPreset)
1264 settingDialog = true;
1265 // updateTable(null,null); // first reset to defaults
1266 WsParamSetI pset = null;
1267 if (nextPreset != null && nextPreset.length() > 0)
1269 pset = paramStore.getPreset(nextPreset);
1273 if (pset.isModifiable())
1275 isUserPreset = true;
1276 setDescr.setText(pset.getDescription());
1277 updateTable(null, pset.getArguments());
1278 lastParmSet = nextPreset;
1282 isUserPreset = false;
1283 setDescr.setText("");
1284 // must be a default preset from service
1285 updateTable(pset, null);
1286 lastParmSet = nextPreset;
1291 isUserPreset = false;
1293 setDescr.setText("");
1294 updateTable(null, null);
1295 lastParmSet = SVC_DEF;
1298 initArgSetModified();
1299 syncSetNamesWithStore();
1300 setName.setSelectedItem(lastParmSet);
1301 SetNamePanel.validate();
1303 settingDialog = false;
1307 * Rebuild the AlignFrame web service menus (after add/delete of a preset
1310 protected void updateWebServiceMenus()
1312 for (AlignFrame alignFrame : Desktop.getAlignFrames())
1314 alignFrame.BuildWebServiceMenu();
1318 String curSetName = null;
1320 public void itemStateChanged(ItemEvent e)
1322 if (e.getSource() == setName && e.getStateChange() == e.SELECTED)
1324 final String setname = (String) setName.getSelectedItem();
1325 System.out.println("Item state changed for " + setname
1326 + " (handling ? " + !settingDialog + ")");
1332 if (setname == null)
1336 javax.swing.SwingUtilities.invokeLater(new Runnable()
1340 doPreferenceComboStateChange(setname);
1346 private void doPreferenceComboStateChange(String setname)
1348 // user has selected a different item from combo-box
1351 String lsetname = (curSetName != null) ? curSetName : lastParmSet;
1352 if (lsetname.equals(setname))
1354 // setname was just edited - so ignore this event.
1357 settingDialog = true;
1358 System.out.println("Prompting to save " + lsetname);
1359 if (javax.swing.JOptionPane
1364 + "' is modifed, and your changes will be lost.\nReally change preset ?",
1365 "Warning: Unsaved Changes",
1366 javax.swing.JOptionPane.OK_CANCEL_OPTION) != JOptionPane.OK_OPTION)
1368 // revert the combobox to the current item
1369 settingDialog = true;
1370 setName.setSelectedItem(lsetname);
1371 settingDialog = false;
1374 // System.out.println("Saving for " + lsetname);
1375 // _storeCurrentPreset(lsetname);
1379 settingDialog = true;
1380 reInitDialog(setname);
1381 settingDialog = false;
1385 private void _renameExistingPreset(String oldName, String curSetName2)
1387 paramStore.updatePreset(oldName, curSetName2, setDescr.getText(),
1392 * store current settings as given name. You should then reset gui.
1394 * @param curSetName2
1396 private void _storeCurrentPreset(String curSetName2)
1398 paramStore.storePreset(curSetName2, setDescr.getText(), getJobParams());
1401 private void _updatePreset(String lastParmSet2, String curname)
1403 paramStore.updatePreset(lastParmSet2, curname, setDescr.getText(),
1409 * last saved name for this user preset
1411 String lastSetName = null;
1414 * last saved value of the description text for this user preset
1416 String lastDescrText = null;
1418 public void actionPerformed(ActionEvent e)
1420 if (e.getSource() instanceof Component)
1422 Component src = (Component) e.getSource();
1423 if (src.getParent() == setName)
1425 // rename any existing records we know about for this set.
1426 String newname = e.getActionCommand().trim();
1428 if (isServicePreset(newname))
1430 final String oldname = curSetName != null ? curSetName
1432 final Component ourframe = this;
1433 settingDialog = true;
1434 setName.getEditor().setItem(oldname);
1435 settingDialog = false;
1436 javax.swing.SwingUtilities.invokeLater(new Runnable()
1440 JOptionPane.showMessageDialog(ourframe, MessageManager
1441 .getString("label.invalid_name_preset_exists"),
1442 MessageManager.getString("label.invalid_name"),
1443 JOptionPane.WARNING_MESSAGE);
1449 curSetName = newname;
1450 System.err.println("New name for user setting " + curSetName
1451 + " (was " + setName.getSelectedItem() + ")");
1452 if (curSetName.equals(setName.getSelectedItem()))
1456 if (curSetName != null)
1458 argSetModified(setName, true);
1466 private void checkDescrModified()
1473 (lastDescrText == null ? setDescr.getText().trim().length() > 0
1474 : !setDescr.getText().equals(lastDescrText)));
1479 public void insertUpdate(DocumentEvent e)
1481 checkDescrModified();
1484 public void removeUpdate(DocumentEvent e)
1486 checkDescrModified();
1489 public void changedUpdate(DocumentEvent e)
1491 checkDescrModified();
1496 * @return null or the service preset selected by the user
1498 public WsParamSetI getPreset()
1500 if (isUserPreset || isModified()
1501 || (lastParmSet != null && lastParmSet.equals(SVC_DEF)))
1507 return paramStore.getPreset(lastParmSet);