2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
24 import java.awt.BorderLayout;
25 import java.awt.Color;
26 import java.awt.Component;
27 import java.awt.Dimension;
28 import java.awt.event.ActionEvent;
29 import java.awt.event.ActionListener;
31 import java.util.ArrayList;
32 import java.util.List;
33 import java.util.Vector;
35 import javax.swing.JLabel;
36 import javax.swing.JPanel;
37 import javax.swing.JTable;
38 import javax.swing.JTextField;
39 import javax.swing.table.AbstractTableModel;
40 import javax.swing.table.TableCellRenderer;
42 import jalview.bin.Cache;
43 import jalview.jbgui.GWsPreferences;
44 import jalview.util.MessageManager;
45 import jalview.ws.WSDiscovererI;
46 import jalview.ws.jws2.Jws2Discoverer;
47 import jalview.ws.rest.RestServiceDescription;
49 public class WsPreferences extends GWsPreferences
52 public WsPreferences()
55 initFromPreferences();
60 Vector<String> oldUrls, rsbsUrls, oldRsbsUrls;
62 private boolean needWsMenuUpdate;
64 private boolean oldJws1, oldJws2, oldIndexByHost, oldIndexByType,
65 oldEnfin, oldWsWarning;
67 private void initFromPreferences()
70 wsUrls = Jws2Discoverer.getInstance().getServiceUrls();
71 if (!wsUrls.isEmpty())
73 oldUrls = new Vector<String>(wsUrls);
78 wsUrls = new Vector<String>();
80 wsList.setDefaultRenderer(Integer.class, new JabaWSStatusRenderer());
81 wsList.setAutoResizeMode(JTable.AUTO_RESIZE_ALL_COLUMNS);
83 rsbsUrls = jalview.ws.rest.RestClient.getRsbsDescriptions();
86 oldRsbsUrls = new Vector<String>(rsbsUrls);
91 rsbsUrls = new Vector<String>();
94 enableEnfinServices.setSelected(
95 oldEnfin = Cache.getDefault("SHOW_ENFIN_SERVICES", true));
96 enableEnfinServices.addActionListener(updateAction);
97 enableJws2Services.setSelected(
98 oldJws2 = Cache.getDefault("SHOW_JWS2_SERVICES", true));
99 enableJws2Services.addActionListener(updateAction);
100 indexByHost.setSelected(
101 oldIndexByHost = Cache.getDefault("WSMENU_BYHOST", false));
102 indexByHost.addActionListener(updateAction);
103 indexByType.setSelected(
104 oldIndexByType = Cache.getDefault("WSMENU_BYTYPE", false));
105 indexByType.addActionListener(updateAction);
106 displayWsWarning.setSelected(oldWsWarning = Cache
107 .getDefault("SHOW_WSDISCOVERY_ERRORS", true));
110 ActionListener updateAction = new ActionListener()
114 public void actionPerformed(ActionEvent e)
121 private void updateList()
123 Object tdat[][] = new Object[wsUrls.size()][2];
125 for (String url : wsUrls)
127 int status = Jws2Discoverer.getInstance().getServerStatusFor(url);
128 tdat[r][1] = Integer.valueOf(status);
132 wsList.setModel(new WsUrlTableModel(tdat));
133 wsList.getColumn(MessageManager.getString("label.status"))
137 private class JabaWSStatusRenderer extends JPanel
138 implements TableCellRenderer
140 public JabaWSStatusRenderer()
143 setMinimumSize(new Dimension(10, 10));
149 * render an Integer reflecting service status as a colour and symbol
153 public Component getTableCellRendererComponent(JTable arg0,
154 Object status, boolean isSelected, boolean hasFocus, int row,
158 String t = new String("");
159 switch (((Integer) status).intValue())
161 case WSDiscovererI.STATUS_OK:
162 // cb.setSelected(true);
166 case WSDiscovererI.STATUS_NO_SERVICES:
167 // cb.setSelected(true);
171 case WSDiscovererI.STATUS_INVALID:
172 // cb.setSelected(false);
176 case WSDiscovererI.STATUS_UNKNOWN:
178 // cb.setSelected(false);
190 private class WsUrlTableModel extends AbstractTableModel
193 private Object[][] data;
195 private String[] columnNames = new String[] {
196 MessageManager.getString("label.service_url"),
197 MessageManager.getString("label.status") };
199 public WsUrlTableModel(Object[][] tdat)
205 public int getColumnCount()
211 public String getColumnName(int column)
213 return columnNames[column];
217 public int getRowCount()
227 public java.lang.Class<?> getColumnClass(int columnIndex)
229 return getValueAt(0, columnIndex).getClass();
233 public Object getValueAt(int rowIndex, int columnIndex)
235 return data[rowIndex][columnIndex];
240 private void updateRsbsList()
242 sbrsList.setListData(rsbsUrls);
245 private void updateServiceList()
247 Jws2Discoverer.getInstance().setServiceUrls(wsUrls);
250 private void updateRsbsServiceList()
252 jalview.ws.rest.RestClient.setRsbsServices(rsbsUrls);
259 * jalview.jbgui.GWsPreferences#deleteWsUrl_actionPerformed(java.awt.event
263 protected void deleteWsUrl_actionPerformed(ActionEvent e)
265 int sel = wsList.getSelectedRow();
277 * @see jalview.jbgui.GWsPreferences#editWsUrl_actionPerformed(java.awt.event.
281 protected void editWsUrl_actionPerformed(ActionEvent e)
283 int sel = wsList.getSelectedRow();
286 String url = editUrl(wsUrls.get(sel),
287 MessageManager.getString("label.edit_jabaws_url"));
290 int present = wsUrls.indexOf(url);
294 wsUrls.set(sel, url);
310 protected void newSbrsUrl_actionPerformed(ActionEvent e)
312 RestServiceEditorPane rse = new RestServiceEditorPane();
313 rse.showDialog(MessageManager.getString("label.add_new_sbrs_service"));
314 String rservice = rse.getEditedRestService();
315 if (rservice != null && !rsbsUrls.contains(rservice))
317 rsbsUrls.add(rservice);
324 protected void editSbrsUrl_actionPerformed(ActionEvent e)
326 int sel = sbrsList.getSelectedIndex();
329 RestServiceEditorPane rse = new RestServiceEditorPane(
330 new RestServiceDescription(rsbsUrls.elementAt(sel)));
331 rse.showDialog(MessageManager.getString("label.edit_sbrs_entry"));
332 String rservice = rse.getEditedRestService();
333 if (rservice != null)
335 int present = rsbsUrls.indexOf(rservice);
339 rsbsUrls.setElementAt(rservice, sel);
346 rsbsUrls.removeElementAt(sel);
355 void updateWsMenuConfig(boolean old)
359 if (oldUrls != wsUrls || (wsUrls != null && oldUrls != null
360 && !wsUrls.equals(oldUrls)))
364 wsUrls = (oldUrls == null) ? null : new Vector(oldUrls);
365 if (oldRsbsUrls != rsbsUrls || (rsbsUrls != null
366 && oldRsbsUrls != null && !oldRsbsUrls.equals(rsbsUrls)))
370 oldRsbsUrls = (oldRsbsUrls == null) ? null : new Vector(oldRsbsUrls);
376 Cache.setProperty("SHOW_ENFIN_SERVICES",
378 old ? oldEnfin : enableEnfinServices.isSelected())
380 Cache.setProperty("SHOW_JWS2_SERVICES",
381 Boolean.valueOf(old ? oldJws2 : enableJws2Services.isSelected())
383 Cache.setProperty("WSMENU_BYHOST",
384 Boolean.valueOf(old ? oldIndexByHost : indexByHost.isSelected())
386 Cache.setProperty("WSMENU_BYTYPE",
387 Boolean.valueOf(old ? oldIndexByType : indexByType.isSelected())
390 Cache.setProperty("SHOW_WSDISCOVERY_ERRORS",
392 old ? oldWsWarning : displayWsWarning.isSelected())
395 updateRsbsServiceList();
402 * jalview.jbgui.GWsPreferences#moveWsUrlDown_actionPerformed(java.awt.event
406 protected void moveWsUrlDown_actionPerformed(ActionEvent e)
408 int p = wsList.getSelectedRow();
409 if (p > -1 && p < wsUrls.size() - 1)
411 String t = wsUrls.get(p + 1);
412 wsUrls.set(p + 1, wsUrls.get(p));
415 wsList.getSelectionModel().setSelectionInterval(p + 1, p + 1);
424 * jalview.jbgui.GWsPreferences#moveWsUrlUp_actionPerformed(java.awt.event
428 protected void moveWsUrlUp_actionPerformed(ActionEvent e)
430 int p = wsList.getSelectedRow();
433 String t = wsUrls.get(p - 1);
434 wsUrls.set(p - 1, wsUrls.get(p));
437 wsList.getSelectionModel().setSelectionInterval(p - 1, p - 1);
442 private String editUrl(String initUrl, String title)
444 String url = initUrl;
450 JTextField urltf = new JTextField(url, 40);
451 JPanel panel = new JPanel(new BorderLayout());
452 JPanel pane12 = new JPanel(new BorderLayout());
453 pane12.add(new JLabel(MessageManager.getString("label.url:")),
454 BorderLayout.CENTER);
455 pane12.add(urltf, BorderLayout.EAST);
456 panel.add(pane12, BorderLayout.NORTH);
457 boolean valid = false;
458 int resp = JvOptionPane.CANCEL_OPTION;
459 while (!valid && (resp = JvOptionPane.showInternalConfirmDialog(
460 Desktop.getDesktopPane(), panel, title,
461 JvOptionPane.OK_CANCEL_OPTION)) == JvOptionPane.OK_OPTION)
465 // TODO: do a better job of checking that the url is a valid discovery
466 // URL for web services.
467 String tx = urltf.getText().trim();
468 while (tx.length() > 0 && tx.lastIndexOf('/') == tx.length() - 1)
470 tx = tx.substring(0, tx.length() - 1);
475 } catch (Exception e)
478 JvOptionPane.showInternalMessageDialog(Desktop.getDesktopPane(),
479 MessageManager.getString("label.invalid_url"));
482 if (valid && resp == JvOptionPane.OK_OPTION)
484 int validate = JvOptionPane.showInternalConfirmDialog(Desktop.getDesktopPane(),
485 MessageManager.getString("info.validate_jabaws_server"),
486 MessageManager.getString("label.test_server"),
487 JvOptionPane.YES_NO_OPTION);
489 if (validate == JvOptionPane.OK_OPTION)
491 if (Jws2Discoverer.getInstance().testServiceUrl(foo))
493 return foo.toString();
497 int opt = JvOptionPane.showInternalOptionDialog(Desktop.getDesktopPane(),
498 "The Server '" + foo.toString()
499 + "' failed validation,\ndo you want to add it anyway? ",
500 "Server Validation Failed", JvOptionPane.YES_NO_OPTION,
501 JvOptionPane.INFORMATION_MESSAGE, null, null, null);
502 if (opt == JvOptionPane.YES_OPTION)
504 return foo.toString();
508 JvOptionPane.showInternalMessageDialog(Desktop.getDesktopPane(),
509 MessageManager.getString(
510 "warn.server_didnt_pass_validation"));
517 // just return the URL anyway
518 return foo.toString();
527 * @see jalview.jbgui.GWsPreferences#newWsUrl_actionPerformed(java.awt.event.
531 protected void newWsUrl_actionPerformed(ActionEvent e)
533 String url = editUrl(null,
534 MessageManager.getString("label.add_jabaws_url"));
537 if (!wsUrls.contains(url))
539 int selind = wsList.getSelectedRow();
542 wsUrls.add(selind, url);
557 * @see jalview.jbgui.GWsPreferences#refreshWs_actionPerformed(java.awt.event.
561 protected void refreshWs_actionPerformed(ActionEvent e)
563 new Thread(new Runnable()
570 lastrefresh = update - 1;
571 updateWsMenuConfig(false);
579 * Refresh the web services menus - but only if there has been a change in the
580 * configuration (indicated by update!=lastrefresh)
582 * @param showProgress
583 * show progress in dialog or on desktop
585 protected void refreshWsMenu(boolean showProgress)
589 new Thread(new Runnable()
595 progressBar.setVisible(true);
597 progressBar.setIndeterminate(true);
598 if (lastrefresh != update)
600 lastrefresh = update;
601 Desktop.getInstance().startServiceDiscovery(true); // wait around for all
602 // threads to complete
606 progressBar.setIndeterminate(false);
607 progressBar.setVisible(false);
615 new Thread(new Runnable()
621 long ct = System.currentTimeMillis();
622 Desktop.getInstance().setProgressBar(MessageManager
623 .getString("status.refreshing_web_service_menus"), ct);
624 if (lastrefresh != update)
626 lastrefresh = update;
627 Desktop.getInstance().startServiceDiscovery(true);
630 Desktop.getInstance().setProgressBar(null, ct);
638 * state counters for ensuring that updates only happen if config has changed.
640 private long update = 0, lastrefresh = 0;
646 * jalview.jbgui.GWsPreferences#resetWs_actionPerformed(java.awt.event.ActionEvent
650 protected void resetWs_actionPerformed(ActionEvent e)
652 Jws2Discoverer.getInstance().setServiceUrls(null);
653 List<String> nwsUrls = Jws2Discoverer.getInstance().getServiceUrls();
654 if (!wsUrls.equals(nwsUrls))
661 updateAndRefreshWsMenuConfig(true);
664 protected void ok_ActionPerformed(ActionEvent e)
666 // update everything regardless.
667 updateAndRefreshWsMenuConfig(false);
670 public void updateAndRefreshWsMenuConfig(
671 final boolean showProgressInDialog)
673 new Thread(new Runnable()
679 updateWsMenuConfig(false);
680 refreshWsMenu(showProgressInDialog);