src/jalview/hmmer/alignment_input.sto

   1 # STOCKHOLM 1.0
   2
   3 FER_CAPAA            ----..---------------------.--------..-------.----
   4 #=GR FER_CAPAA    PP ..................................................
   5 FER_CAPAN            -A--..SVSATMISTSFMPRKPAVTSL.KPIPNVGE..ALFGLKS.A--N
   6 #=GR FER_CAPAN    PP .4....689******************.********..*******.9..8
   7 FER1_SOLLC           -A--..SISGTMISTSFLPRKPAVTSL.KAISNVGE..ALFGLKS.G--R
   8 #=GR FER1_SOLLC   PP .4....789******************.********..*******.*..9
   9 Q93XJ9_SOLTU         -A--..SISGTMISTSFLPRKPVVTSL.KAISNVGE..ALFGLKS.G--R
  10 #=GR Q93XJ9_SOLTU PP .4....789******************.********..*******.*..9
  11 FER1_PEA             MATT.pALYGTAVSTSFLRTQPMPMSV.TTTKAFSN..GFLGLKT.SLKR
  12 #=GR FER1_PEA     PP 8999.9*********************.********..*******.****
  13 Q7XA98_TRIPR         MATT.pALYGTAVSTSFMRRQPVPMSV.ATTTTTKAfpSGFGLKSvSTKR
  14 #=GR Q7XA98_TRIPR PP 8999.9*********************.887777765699****97899*
  15 FER1_MESCR           MAATtaALSGATMSTAFAPKTP-PMTA.ALPTNVGR..ALFGLKS.SASR
  16 #=GR FER1_MESCR   PP 56655799***********755.6666.89******..*******.*987
  17 FER1_SPIOL           MAAT..TTTMMGMATTFVPKPQAPPMMaALPSNTGR..SLFGLKT.GSR-
  18 #=GR FER1_SPIOL   PP 8888..8888889**********999978999****..*******.954.
  19 FER3_RAPSA           ----..---------------------.--------..-------.----
  20 #=GR FER3_RAPSA   PP ..................................................
  21 FER2_ARATH           MAST..ALSSAIVGTSFIRRSPAPISLrSLPSANTQ..SLFGLKS.GTAR
  22 #=GR FER2_ARATH   PP 9***..*********************9999*****..*******.****
  23 FER_BRANA            ----..---------------------.--------..-------.----
  24 #=GR FER_BRANA    PP ..................................................
  25 FER1_ARATH           MAST..ALSSAIVSTSFLRRQQTPISLrSLPFANTQ..SLFGLKS.STAR
  26 #=GR FER1_ARATH   PP 9***..*********************999******..*******.****
  27 Q93Z60_ARATH         MAST..ALSSAIVSTSFLRRQQTPISLrSLPFANTQ..SLFGLKS.STAR
  28 #=GR Q93Z60_ARATH PP 9***..*********************999******..*******.****
  29 FER1_MAIZE           ----..RAPAFFFSSSSLRAAPAPTAV.A-LPAAKV..GIMGRSA.SSRR
  30 #=GR FER1_MAIZE   PP ......567899***************.5.567899..*******.*988
  31 O80429_MAIZE         ----..--AATALSMSILRA--PPPCF.SSPLRLRV..AVAKPLA.APMR
  32 #=GR O80429_MAIZE PP ........57899*****95..34555.89******..*******.****
  33 #=GC PP_cons         8799..8999*********9*999999.999999**..*******.*999
  34 #=GC RF              xxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxx.xxxx
  35
  36 FER_CAPAA            -------ASYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGS
  37 #=GR FER_CAPAA    PP .......89*****************************************
  38 FER_CAPAN            GGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGS
  39 #=GR FER_CAPAN    PP 9*************************************************
  40 FER1_SOLLC           NGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGS
  41 #=GR FER1_SOLLC   PP 9*************************************************
  42 Q93XJ9_SOLTU         NGRITCMASYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGS
  43 #=GR Q93XJ9_SOLTU PP 9*************************************************
  44 FER1_PEA             GDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGS
  45 #=GR FER1_PEA     PP **************************************************
  46 Q7XA98_TRIPR         GDLAVAMATYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGS
  47 #=GR Q7XA98_TRIPR PP **************************************************
  48 FER1_MESCR           -GRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGS
  49 #=GR FER1_MESCR   PP .9************************************************
  50 FER1_SPIOL           -GGRMTMAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGS
  51 #=GR FER1_SPIOL   PP .55678********************************************
  52 FER3_RAPSA           -------ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGS
  53 #=GR FER3_RAPSA   PP .......8******************************************
  54 FER2_ARATH           GGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGS
  55 #=GR FER2_ARATH   PP **************************************************
  56 FER_BRANA            -------ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGS
  57 #=GR FER_BRANA    PP .......8******************************************
  58 FER1_ARATH           GGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGS
  59 #=GR FER1_ARATH   PP **************************************************
  60 Q93Z60_ARATH         GGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGS
  61 #=GR Q93Z60_ARATH PP **************************************************
  62 FER1_MAIZE           --RLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGS
  63 #=GR FER1_MAIZE   PP ..9***********************************************
  64 O80429_MAIZE         RQLLRAQATYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGS
  65 #=GR O80429_MAIZE PP **************************************************
  66 #=GC PP_cons         *99***********************************************
  67 #=GC RF              xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
  68
  69 FER_CAPAA            CSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEA
  70 #=GR FER_CAPAA    PP **************************************************
  71 FER_CAPAN            CSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEA
  72 #=GR FER_CAPAN    PP **************************************************
  73 FER1_SOLLC           CSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEE
  74 #=GR FER1_SOLLC   PP **************************************************
  75 Q93XJ9_SOLTU         CSSCAGKVTAGTVDQSDGKFLDDDQEAAGFVLTCVAYPKCDVTIETHKEE
  76 #=GR Q93XJ9_SOLTU PP **************************************************
  77 FER1_PEA             CSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEE
  78 #=GR FER1_PEA     PP **************************************************
  79 Q7XA98_TRIPR         CSSCAGKVVNGNVNQEDGSFLDDEQIEGGWVLTCVAFPTSDVTIETHKEE
  80 #=GR Q7XA98_TRIPR PP **************************************************
  81 FER1_MESCR           CSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEE
  82 #=GR FER1_MESCR   PP **************************************************
  83 FER1_SPIOL           CSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEE
  84 #=GR FER1_SPIOL   PP **************************************************
  85 FER3_RAPSA           CSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREE
  86 #=GR FER3_RAPSA   PP **************************************************
  87 FER2_ARATH           CSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEE
  88 #=GR FER2_ARATH   PP **************************************************
  89 FER_BRANA            CSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEE
  90 #=GR FER_BRANA    PP **************************************************
  91 FER1_ARATH           CSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEE
  92 #=GR FER1_ARATH   PP **************************************************
  93 Q93Z60_ARATH         CSSCAGKVVSGSIDQSDQSFLDD---------------------------
  94 #=GR Q93Z60_ARATH PP **********************8...........................
  95 FER1_MAIZE           CSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEE
  96 #=GR FER1_MAIZE   PP **************************************************
  97 O80429_MAIZE         CSSCAGKVVSGSVDQSDQSFLNDNQVADGWVLTCAAYPTSDVVIETHKED
  98 #=GR O80429_MAIZE PP **************************************************
  99 #=GC PP_cons         **************************************************
 100 #=GC RF              xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
 101
 102 FER_CAPAA            ELV-
 103 #=GR FER_CAPAA    PP *98.
 104 FER_CAPAN            ELV-
 105 #=GR FER_CAPAN    PP *98.
 106 FER1_SOLLC           ELTA
 107 #=GR FER1_SOLLC   PP **96
 108 Q93XJ9_SOLTU         ELTA
 109 #=GR Q93XJ9_SOLTU PP **96
 110 FER1_PEA             DLTA
 111 #=GR FER1_PEA     PP **96
 112 Q7XA98_TRIPR         ELTA
 113 #=GR Q7XA98_TRIPR PP **96
 114 FER1_MESCR           ELTA
 115 #=GR FER1_MESCR   PP **96
 116 FER1_SPIOL           ELTA
 117 #=GR FER1_SPIOL   PP **96
 118 FER3_RAPSA           DMV-
 119 #=GR FER3_RAPSA   PP *96.
 120 FER2_ARATH           DIV-
 121 #=GR FER2_ARATH   PP *96.
 122 FER_BRANA            ELV-
 123 #=GR FER_BRANA    PP *97.
 124 FER1_ARATH           AI--
 125 #=GR FER1_ARATH   PP 87..
 126 Q93Z60_ARATH         ----
 127 #=GR Q93Z60_ARATH PP ....
 128 FER1_MAIZE           ELT-
 129 #=GR FER1_MAIZE   PP **8.
 130 O80429_MAIZE         DLL-
 131 #=GR O80429_MAIZE PP *95.
 132 #=GC PP_cons         *986
 133 #=GC RF              xxxx
 134 //