3 import jalview.gui.*;
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4 import jalview.datamodel.*;
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5 import jalview.schemes.*;
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7 import javax.swing.*;
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12 public class HTMLOutput
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16 public HTMLOutput(AlignViewport av)
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18 SequenceRenderer sr = new SequenceRenderer(av);
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20 JFileChooser chooser = new JFileChooser(jalview.bin.Cache.LAST_DIRECTORY);
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21 chooser.setDialogTitle("Save as HTML");
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22 chooser.setToolTipText("Save");
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23 int value = chooser.showSaveDialog(null);
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24 if(value == JFileChooser.APPROVE_OPTION)
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26 String choice = chooser.getSelectedFile().getPath();
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27 jalview.bin.Cache.LAST_DIRECTORY = choice;
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29 PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(choice));
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30 out.println("<HTML>");
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31 out.println("<style type=\"text/css\">");
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32 out.println("<!--");
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33 out.print("td {font-family: \""+av.getFont().getFamily()+"\", \""+av.getFont().getName()+ "\", mono; "
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34 +"font-size: "+av.getFont().getSize()+"px; ");
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37 if (av.getFont().getStyle() == Font.BOLD)
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38 out.print("font-weight: BOLD; ");
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40 if (av.getFont().getStyle() == Font.ITALIC)
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41 out.print("font-style: italic; ");
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43 out.println("text-align: center; }");
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46 out.println("</style>");
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47 out.println("<BODY>");
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48 out.println("<table border=\"1\"><tr><td>\n");
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49 out.println("<table border=\"0\" cellpadding=\"0\" cellspacing=\"0\">\n");
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53 SequenceGroup [] groups;
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55 ColourSchemeI cs = null;
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56 AlignmentI alignment = av.getAlignment();
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59 // draws the top row, the measure rule
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60 out.println("<tr><td colspan=\"6\"></td>");
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62 for(i=10; i<alignment.getWidth()-10; i+=10)
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63 out.println("<td colspan=\"9\">"+i+"<br>|</td><td></td>");
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65 out.println("<td colspan=\"3\"></td><td colspan=\"3\">"+i+"<br>|</td>");
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66 out.println("</tr>");
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68 for (i = 0; i < alignment.getHeight(); i++)
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70 seq = alignment.getSequenceAt(i);
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71 groups = alignment.findAllGroups( seq );
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72 out.println("<tr><td nowrap>"+seq.getDisplayId()+" </td>");
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75 for (int res = 0; res < seq.getLength(); res++)
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77 cs = av.getGlobalColourScheme();
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81 for (int k = 0; k < groups.length; k++)
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82 if (groups[k].getStartRes() <= res && groups[k].getEndRes() >= res)
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90 color = sr.getResidueBoxColour(cs, seq, res);
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92 if(color.getRGB()<-1)
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94 r = Integer.toHexString(color.getRed());
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97 g = Integer.toHexString(color.getGreen());
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100 b = Integer.toHexString(color.getBlue());
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103 out.println("<td bgcolor=\"#"+ r + g + b + "\">"+seq.getCharAt(res)+"</td>");
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106 out.println("<td>"+seq.getCharAt(res)+"</td>");
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110 out.println("</tr>");
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113 out.println("</table>");
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114 out.println("</td></tr></table>\n</body>\n</html>");
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118 jalview.util.BrowserLauncher.openURL( "file:///"+choice );
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120 catch(Exception ex){ex.printStackTrace();}
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