src/jalview/io/HTMLOutput.java

   1 package jalview.io;\r
   2 \r
   3 import jalview.gui.*;\r
   4 import jalview.datamodel.*;\r
   5 import jalview.schemes.*;\r
   6 import java.awt.*;\r
   7 import javax.swing.*;\r
   8 import java.io.*;\r
   9 import java.util.*;\r
  10 \r
  11 \r
  12 public class HTMLOutput\r
  13 {\r
  14   SequenceRenderer sr = new SequenceRenderer(null);\r
  15 \r
  16   public HTMLOutput(AlignmentI alignment, ColourSchemeI cs)\r
  17   {\r
  18     Color color;\r
  19     JFileChooser chooser = new JFileChooser(jalview.bin.Cache.LAST_DIRECTORY);\r
  20     chooser.setDialogTitle("Save as HTML");\r
  21     chooser.setToolTipText("Save");\r
  22     int value = chooser.showSaveDialog(null);\r
  23     if(value == JFileChooser.APPROVE_OPTION)\r
  24     {\r
  25       String choice =  chooser.getSelectedFile().getPath();\r
  26       jalview.bin.Cache.LAST_DIRECTORY = choice;\r
  27       try{\r
  28         PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(choice));\r
  29         out.println("<HTML>");\r
  30         out.println("<style type=\"text/css\">");\r
  31         out.println("<!--");\r
  32         out.println("td {font-family: \"Courier New\", Courier, mono; font-size: medium;");\r
  33         out.println("   font-size: medium; text-align: center; }");\r
  34         out.println("-->");\r
  35         out.println("</style>");\r
  36         out.println("<BODY>");\r
  37         out.println("<table border=\"1\"><tr><td>\n");\r
  38         out.println("<table border=\"0\"  cellpadding=\"0\" cellspacing=\"0\">\n");\r
  39 \r
  40 \r
  41         //////////////\r
  42         for (int i = 0; i < alignment.getHeight(); i++)\r
  43         {\r
  44           SequenceI seq = alignment.getSequenceAt(i);\r
  45           out.println("<tr><td>"+seq.getName()+"&nbsp;&nbsp;</td>");\r
  46           for (int res = 0; res < seq.getLength(); res++)\r
  47           {\r
  48             color = sr.getResidueBoxColour(cs, seq, res);\r
  49 \r
  50             if(color.getRGB()<-1)\r
  51             {\r
  52               out.println("<td bgcolor=\"#"\r
  53                         + Integer.toHexString(color.getRed())\r
  54                         + Integer.toHexString(color.getGreen())\r
  55                         + Integer.toHexString(color.getBlue())\r
  56                         + "\">"+seq.getCharAt(res)+"</td>");\r
  57             }\r
  58             else\r
  59               out.println("<td>"+seq.getCharAt(res)+"</td>");\r
  60 \r
  61           }\r
  62 \r
  63           out.println("</tr>");\r
  64         }\r
  65         //////////////\r
  66         out.println("</table>");\r
  67         out.println("</td></tr></table>\n</body>\n</html>");\r
  68 \r
  69         out.close();\r
  70 \r
  71         jalview.util.BrowserLauncher.openURL( choice );\r
  72       }\r
  73       catch(Exception ex){}\r
  74     }\r
  75   }\r
  76 \r
  77 \r
  78 }\r