2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
24 * IO for asymmetric matrix with arbitrary dimension with labels, as displayed
25 * by PCA viewer. Form is: tab separated entity defs header line TITLE\ttitle
26 * DESC\tdesc PROPERTY\t<id or empty for whole matrix>\tname\ttype\tvalue
27 * ROW\tRow i label (ID)/tPrinciple text/tprinciple description/t...
28 * COLUMN\t(similar, optional).. .. <float>\t<float>...(column-wise data for row
32 public class MatrixFile extends FileParse