2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
\r
3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
\r
5 * This file is part of Jalview.
\r
7 * Jalview is free software: you can redistribute it and/or
\r
8 * modify it under the terms of the GNU General Public License
\r
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
\r
11 * Jalview is distributed in the hope that it will be useful, but
\r
12 * WITHOUT ANY WARRANTY; without even the implied warranty
\r
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
\r
14 * PURPOSE. See the GNU General Public License for more details.
\r
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
\r
20 import java.io.IOException;
\r
23 * IO for asymmetric matrix with arbitrary dimension with labels, as displayed
\r
24 * by PCA viewer. Form is: tab separated entity defs header line TITLE\ttitle
\r
25 * DESC\tdesc PROPERTY\t<id or empty for whole matrix>\tname\ttype\tvalue
\r
26 * ROW\tRow i label (ID)/tPrinciple text/tprinciple description/t...
\r
27 * COLUMN\t(similar, optional).. .. <float>\t<float>...(column-wise data for row
\r
31 public class MatrixFile extends FileParse
\r