2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
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3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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21 import java.io.IOException;
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24 * IO for asymmetric matrix with arbitrary dimension
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25 * with labels, as displayed by PCA viewer.
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26 * Form is: tab separated entity defs
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30 * PROPERTY\t<id or empty for whole matrix>\tname\ttype\tvalue
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31 * ROW\tRow i label (ID)/tPrinciple text/tprinciple description/t...
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32 * COLUMN\t(similar, optional)..
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34 * <float>\t<float>...(column-wise data for row i)
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37 public class MatrixFile extends FileParse
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