src/jalview/io/VamsasClient.java

   1 /**
   2  *
   3  */
   4 package jalview.io;
   5
   6 import jalview.bin.Cache;
   7 import jalview.gui.Desktop;
   8
   9 import org.vamsas.client.UserHandle;
  10 import org.vamsas.client.simpleclient.FileWatcher;
  11 import org.vamsas.client.simpleclient.VamsasArchive;
  12 import org.vamsas.client.simpleclient.VamsasFile;
  13 import org.vamsas.test.simpleclient.ArchiveClient;
  14
  15 /**
  16  * @author jimp
  17  *
  18  */
  19 public class VamsasClient extends ArchiveClient {
  20         Desktop us;
  21         public VamsasClient(Desktop jdesktop,
  22                         String sessionPath) {
  23                 super("Jalview User", "Dundee", // new org.vamsas.client.ClientHandle("jalview","2.7"),
  24                                 sessionPath);
  25                 us=jdesktop;
  26         }
  27         public void initial_update() {
  28                 Cache.log.info("Jalview loading the Vamsas Session.");
  29                 // load in the vamsas archive for the first time
  30
  31                 // VamsasArchive doc = new VamsasArchive();
  32         }
  33         public void get_update(VamsasArchive doc) {
  34                 Cache.log.info("Jalview updating from Vamsas Session.");
  35         }
  36         public void push_update() {
  37                 // collect all uncached alignments and put them into the vamsas dataset.
  38                 // store them.
  39                 Cache.log.info("Jalview updating the Vamsas Session.");
  40         }
  41         public void end_session() {
  42                 // stop any update/watcher thread.
  43                 Cache.log.info("Jalview disconnecting from the Vamsas Session.");
  44         }
  45         protected class VamsasClientWatcher extends Thread implements Runnable {
  46                 /* (non-Javadoc)
  47                  * @see java.lang.Thread#run()
  48                  */
  49                 VamsasClient client=null;
  50                 VamsasClientWatcher(VamsasClient client) {
  51                         this.client = client;
  52                 }
  53                 public void run() {
  54                         VamsasArchive docio = client.watch(0);
  55                         client.get_update(docio);
  56                 }
  57
  58         }
  59         /**
  60          * @param args
  61          */
  62         public static void main(String[] args) {
  63                 // TODO Auto-generated method stub
  64
  65         }
  66
  67 }