2 * Jalview - A Sequence Alignment Editor and Viewer
3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
5 * This program is free software; you can redistribute it and/or
6 * modify it under the terms of the GNU General Public License
7 * as published by the Free Software Foundation; either version 2
8 * of the License, or (at your option) any later version.
10 * This program is distributed in the hope that it will be useful,
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 * GNU General Public License for more details.
15 * You should have received a copy of the GNU General Public License
16 * along with this program; if not, write to the Free Software
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
22 import jalview.bin.Cache;
23 import jalview.datamodel.AlignmentAnnotation;
24 import jalview.datamodel.AlignmentI;
25 import jalview.datamodel.AlignmentView;
26 import jalview.datamodel.DBRefEntry;
27 import jalview.datamodel.SequenceFeature;
28 import jalview.datamodel.SequenceI;
31 import java.util.HashMap;
32 import java.util.HashSet;
33 import java.util.Hashtable;
34 import java.util.IdentityHashMap;
35 import java.util.Vector;
36 import java.util.jar.*;
37 import org.exolab.castor.xml.*;
38 import org.exolab.castor.mapping.Mapping;
43 * org.exolab.castor.util.LocalConfiguration.getInstance().getProperties().setProperty(
44 * "org.exolab.castor.serializer", "org.apache.xml.serialize.XMLSerilazizer"); }
48 public class VamsasDatastore {