JAL-2416 order score models by order of addition rather than name
[jalview.git] / src / jalview / jbgui / GAlignmentPanel.java
1 /*
2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
4  * 
5  * This file is part of Jalview.
6  * 
7  * Jalview is free software: you can redistribute it and/or
8  * modify it under the terms of the GNU General Public License 
9  * as published by the Free Software Foundation, either version 3
10  * of the License, or (at your option) any later version.
11  *  
12  * Jalview is distributed in the hope that it will be useful, but 
13  * WITHOUT ANY WARRANTY; without even the implied warranty 
14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
15  * PURPOSE.  See the GNU General Public License for more details.
16  * 
17  * You should have received a copy of the GNU General Public License
18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
19  * The Jalview Authors are detailed in the 'AUTHORS' file.
20  */
21 package jalview.jbgui;
22
23 import java.awt.BorderLayout;
24 import java.awt.Color;
25 import java.awt.Dimension;
26
27 import javax.swing.BorderFactory;
28 import javax.swing.ButtonGroup;
29 import javax.swing.JPanel;
30 import javax.swing.JScrollBar;
31 import javax.swing.JScrollPane;
32 import javax.swing.border.Border;
33
34 public class GAlignmentPanel extends JPanel
35 {
36   protected JPanel sequenceHolderPanel = new JPanel();
37
38   protected JScrollBar vscroll = new JScrollBar();
39
40   protected JScrollBar hscroll = new JScrollBar();
41
42   protected JPanel seqPanelHolder = new JPanel();
43
44   BorderLayout borderLayout1 = new BorderLayout();
45
46   BorderLayout borderLayout3 = new BorderLayout();
47
48   protected JPanel scalePanelHolder = new JPanel();
49
50   protected JPanel idPanelHolder = new JPanel();
51
52   BorderLayout borderLayout5 = new BorderLayout();
53
54   protected JPanel idSpaceFillerPanel1 = new JPanel();
55
56   public JPanel annotationSpaceFillerHolder = new JPanel();
57
58   BorderLayout borderLayout6 = new BorderLayout();
59
60   ButtonGroup buttonGroup1 = new ButtonGroup();
61
62   BorderLayout borderLayout7 = new BorderLayout();
63
64   JPanel hscrollHolder = new JPanel();
65
66   BorderLayout borderLayout10 = new BorderLayout();
67
68   protected JPanel hscrollFillerPanel = new JPanel();
69
70   BorderLayout borderLayout11 = new BorderLayout();
71
72   public JScrollPane annotationScroller = new JScrollPane();
73
74   Border border1;
75
76   BorderLayout borderLayout4 = new BorderLayout();
77
78   public GAlignmentPanel()
79   {
80     try
81     {
82       jbInit();
83     } catch (Exception e)
84     {
85       e.printStackTrace();
86     }
87   }
88
89   private void jbInit() throws Exception
90   {
91     border1 = BorderFactory.createLineBorder(Color.gray, 1);
92     idPanelHolder.setBorder(null);
93     idPanelHolder.setPreferredSize(new Dimension(70, 10));
94     this.setLayout(borderLayout7);
95     sequenceHolderPanel
96             .setMaximumSize(new Dimension(2147483647, 2147483647));
97     sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));
98     sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));
99     sequenceHolderPanel.setLayout(borderLayout3);
100     seqPanelHolder.setLayout(borderLayout1);
101     scalePanelHolder.setBackground(Color.white);
102     scalePanelHolder.setMinimumSize(new Dimension(10, 80));
103     scalePanelHolder.setPreferredSize(new Dimension(10, 30));
104     scalePanelHolder.setLayout(borderLayout6);
105     idPanelHolder.setLayout(borderLayout5);
106     idSpaceFillerPanel1.setBackground(Color.white);
107     idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
108     idSpaceFillerPanel1.setLayout(borderLayout11);
109     annotationSpaceFillerHolder.setBackground(Color.white);
110     annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));
111     annotationSpaceFillerHolder.setLayout(borderLayout4);
112     hscroll.setOrientation(JScrollBar.HORIZONTAL);
113     hscrollHolder.setLayout(borderLayout10);
114     hscrollFillerPanel.setBackground(Color.white);
115     hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));
116     hscrollHolder.setBackground(Color.white);
117     annotationScroller.setBorder(null);
118     annotationScroller.setPreferredSize(new Dimension(10, 80));
119     this.setPreferredSize(new Dimension(220, 166));
120
121     sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);
122     sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);
123     seqPanelHolder.add(vscroll, BorderLayout.EAST);
124     sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);
125
126     // jPanel3.add(secondaryPanelHolder, BorderLayout.SOUTH);
127     this.add(idPanelHolder, BorderLayout.WEST);
128     idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);
129     idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);
130     this.add(hscrollHolder, BorderLayout.SOUTH);
131     hscrollHolder.add(hscroll, BorderLayout.CENTER);
132     hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);
133     this.add(sequenceHolderPanel, BorderLayout.CENTER);
134   }
135 }