2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.io.FileFormatException;
25 import jalview.util.MessageManager;
26 import jalview.util.Platform;
28 import java.awt.FlowLayout;
29 import java.awt.Toolkit;
30 import java.awt.event.ActionEvent;
31 import java.awt.event.ActionListener;
33 import javax.swing.JCheckBoxMenuItem;
34 import javax.swing.JFrame;
35 import javax.swing.JMenu;
36 import javax.swing.JMenuBar;
37 import javax.swing.JMenuItem;
45 @SuppressWarnings("serial")
46 public class GDesktop extends JFrame
49 protected static JMenu windowMenu = new JMenu();
51 JMenuBar desktopMenubar = new JMenuBar();
53 JMenu FileMenu = new JMenu();
55 JMenu HelpMenu = new JMenu();
57 protected JMenu VamsasMenu = new JMenu();
59 protected JMenu VamsasStMenu = new JMenu();
61 JMenuItem inputLocalFileMenuItem = new JMenuItem();
63 JMenuItem inputURLMenuItem = new JMenuItem();
65 JMenuItem inputTextboxMenuItem = new JMenuItem();
67 JMenuItem quit = new JMenuItem();
69 JMenuItem aboutMenuItem = new JMenuItem();
71 JMenuItem documentationMenuItem = new JMenuItem();
73 FlowLayout flowLayout1 = new FlowLayout();
75 protected JMenu toolsMenu = new JMenu();
77 JMenuItem preferences = new JMenuItem();
79 JMenuItem saveState = new JMenuItem();
81 JMenuItem saveAsState = new JMenuItem();
83 JMenuItem loadState = new JMenuItem();
85 JMenu inputMenu = new JMenu();
87 protected JMenuItem vamsasStart = new JMenuItem();
89 protected JMenuItem vamsasImport = new JMenuItem();
91 protected JMenuItem vamsasSave = new JMenuItem();
93 JMenuItem inputSequence = new JMenuItem();
95 protected JMenuItem vamsasStop = new JMenuItem();
97 JMenuItem closeAll = new JMenuItem();
99 JMenuItem raiseRelated = new JMenuItem();
101 JMenuItem minimizeAssociated = new JMenuItem();
103 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
105 JMenuItem garbageCollect = new JMenuItem();
107 protected JMenuItem groovyShell;
109 protected JCheckBoxMenuItem experimentalFeatures;
111 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
113 protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
115 protected JMenuItem snapShotWindow = new JMenuItem();
118 * Creates a new GDesktop object.
126 this.setJMenuBar(desktopMenubar);
127 } catch (Exception e)
132 if (Platform.allowMnemonics())
134 //BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
135 // but here we want just not a Mac, period, right?
136 FileMenu.setMnemonic('F');
137 inputLocalFileMenuItem.setMnemonic('L');
138 VamsasMenu.setMnemonic('V');
139 inputURLMenuItem.setMnemonic('U');
140 inputTextboxMenuItem.setMnemonic('C');
141 quit.setMnemonic('Q');
142 saveState.setMnemonic('S');
143 loadState.setMnemonic('L');
144 inputMenu.setMnemonic('I');
154 private void jbInit() throws Exception
156 setName("jalview-desktop");
157 FileMenu.setText(MessageManager.getString("action.file"));
158 HelpMenu.setText(MessageManager.getString("action.help"));
159 VamsasMenu.setText("Vamsas");
160 VamsasMenu.setToolTipText(MessageManager
161 .getString("label.share_data_vamsas_applications"));
162 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
163 VamsasStMenu.setToolTipText(
164 MessageManager.getString("label.join_existing_vamsas_session"));
165 inputLocalFileMenuItem
166 .setText(MessageManager.getString("label.load_tree_from_file"));
167 inputLocalFileMenuItem.setAccelerator(
168 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
169 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
171 inputLocalFileMenuItem
172 .addActionListener(new java.awt.event.ActionListener()
175 public void actionPerformed(ActionEvent e)
177 inputLocalFileMenuItem_actionPerformed(null);
180 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
181 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
184 public void actionPerformed(ActionEvent e)
188 inputURLMenuItem_actionPerformed(null);
189 } catch (FileFormatException e1)
191 System.err.println("Error loading from URL: " + e1.getMessage());
196 .setText(MessageManager.getString("label.from_textbox"));
198 .addActionListener(new java.awt.event.ActionListener()
201 public void actionPerformed(ActionEvent e)
203 inputTextboxMenuItem_actionPerformed(null);
206 quit.setText(MessageManager.getString("action.quit"));
207 quit.addActionListener(new java.awt.event.ActionListener()
210 public void actionPerformed(ActionEvent e)
215 aboutMenuItem.setText(MessageManager.getString("label.about"));
216 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
219 public void actionPerformed(ActionEvent e)
221 aboutMenuItem_actionPerformed(e);
224 documentationMenuItem
225 .setText(MessageManager.getString("label.documentation"));
226 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
227 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
228 documentationMenuItem
229 .addActionListener(new java.awt.event.ActionListener()
232 public void actionPerformed(ActionEvent e)
234 documentationMenuItem_actionPerformed();
237 this.getContentPane().setLayout(flowLayout1);
238 windowMenu.setText(MessageManager.getString("label.window"));
239 preferences.setText(MessageManager.getString("label.preferences"));
240 preferences.addActionListener(new ActionListener()
243 public void actionPerformed(ActionEvent e)
245 preferences_actionPerformed(e);
248 toolsMenu.setText(MessageManager.getString("label.tools"));
249 saveState.setText(MessageManager.getString("action.save_project"));
250 saveState.addActionListener(new ActionListener()
253 public void actionPerformed(ActionEvent e)
255 saveState_actionPerformed();
258 saveAsState.setText(MessageManager.getString("action.save_project_as"));
259 saveAsState.addActionListener(new ActionListener()
262 public void actionPerformed(ActionEvent e)
264 saveAsState_actionPerformed(e);
267 loadState.setText(MessageManager.getString("action.load_project"));
268 loadState.addActionListener(new ActionListener()
271 public void actionPerformed(ActionEvent e)
273 loadState_actionPerformed();
276 inputMenu.setText(MessageManager.getString("label.input_alignment"));
278 .setText(MessageManager.getString("label.new_vamsas_session"));
279 vamsasStart.setVisible(false);
280 vamsasStart.addActionListener(new ActionListener()
283 public void actionPerformed(ActionEvent e)
285 vamsasStart_actionPerformed(e);
288 vamsasImport.setText(
289 MessageManager.getString("action.load_vamsas_session"));
290 vamsasImport.setVisible(false);
291 vamsasImport.addActionListener(new ActionListener()
294 public void actionPerformed(ActionEvent e)
296 vamsasImport_actionPerformed(e);
300 MessageManager.getString("action.save_vamsas_session"));
301 vamsasSave.setVisible(false);
302 vamsasSave.addActionListener(new ActionListener()
305 public void actionPerformed(ActionEvent e)
307 vamsasSave_actionPerformed(e);
311 .setText(MessageManager.getString("action.fetch_sequences"));
312 inputSequence.addActionListener(new ActionListener()
315 public void actionPerformed(ActionEvent e)
317 inputSequence_actionPerformed(e);
321 .setText(MessageManager.getString("label.stop_vamsas_session"));
322 vamsasStop.setVisible(false);
323 vamsasStop.addActionListener(new ActionListener()
326 public void actionPerformed(ActionEvent e)
328 vamsasStop_actionPerformed(e);
331 closeAll.setText(MessageManager.getString("action.close_all"));
332 closeAll.addActionListener(new ActionListener()
335 public void actionPerformed(ActionEvent e)
337 closeAll_actionPerformed(e);
340 raiseRelated.setText(
341 MessageManager.getString("action.raise_associated_windows"));
342 raiseRelated.addActionListener(new ActionListener()
345 public void actionPerformed(ActionEvent e)
347 raiseRelated_actionPerformed(e);
350 minimizeAssociated.setText(
351 MessageManager.getString("action.minimize_associated_windows"));
352 minimizeAssociated.addActionListener(new ActionListener()
355 public void actionPerformed(ActionEvent e)
357 minimizeAssociated_actionPerformed(e);
361 .setText(MessageManager.getString("label.collect_garbage"));
362 garbageCollect.addActionListener(new ActionListener()
365 public void actionPerformed(ActionEvent e)
367 garbageCollect_actionPerformed(e);
371 .setText(MessageManager.getString("label.show_memory_usage"));
372 showMemusage.addActionListener(new ActionListener()
375 public void actionPerformed(ActionEvent e)
377 showMemusage_actionPerformed(e);
381 .setText(MessageManager.getString("label.show_java_console"));
382 showConsole.addActionListener(new ActionListener()
385 public void actionPerformed(ActionEvent e)
387 showConsole_actionPerformed(e);
390 showNews.setText(MessageManager.getString("label.show_jalview_news"));
391 showNews.addActionListener(new ActionListener()
394 public void actionPerformed(ActionEvent e)
396 showNews_actionPerformed(e);
399 groovyShell = new JMenuItem();
400 groovyShell.setText(MessageManager.getString("label.groovy_console"));
401 groovyShell.addActionListener(new ActionListener()
404 public void actionPerformed(ActionEvent e)
406 groovyShell_actionPerformed();
409 experimentalFeatures = new JCheckBoxMenuItem();
411 .setText(MessageManager.getString("label.show_experimental"));
412 experimentalFeatures.setToolTipText(
413 MessageManager.getString("label.show_experimental_tip"));
414 experimentalFeatures.addActionListener(new ActionListener()
417 public void actionPerformed(ActionEvent e)
419 showExperimental_actionPerformed(experimentalFeatures.isSelected());
423 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
424 snapShotWindow.addActionListener(new ActionListener()
427 public void actionPerformed(ActionEvent e)
429 snapShotWindow_actionPerformed(e);
433 desktopMenubar.add(FileMenu);
434 desktopMenubar.add(toolsMenu);
435 VamsasMenu.setVisible(false);
436 desktopMenubar.add(VamsasMenu);
437 desktopMenubar.add(HelpMenu);
438 desktopMenubar.add(windowMenu);
439 FileMenu.add(inputMenu);
440 FileMenu.add(inputSequence);
441 FileMenu.addSeparator();
442 FileMenu.add(saveState);
443 FileMenu.add(saveAsState);
444 FileMenu.add(loadState);
445 FileMenu.addSeparator();
447 HelpMenu.add(aboutMenuItem);
448 HelpMenu.add(documentationMenuItem);
449 VamsasMenu.add(VamsasStMenu);
450 VamsasStMenu.setVisible(false);
451 VamsasMenu.add(vamsasStart);
452 VamsasMenu.add(vamsasImport);
453 VamsasMenu.add(vamsasSave);
454 VamsasMenu.add(vamsasStop);
455 toolsMenu.add(preferences);
456 if (!Platform.isJS())
458 toolsMenu.add(showMemusage);
459 toolsMenu.add(showConsole);
461 if (!Platform.isJS())
463 toolsMenu.add(showNews);
464 toolsMenu.add(garbageCollect);
465 toolsMenu.add(groovyShell);
467 toolsMenu.add(experimentalFeatures);
468 // toolsMenu.add(snapShotWindow);
469 inputMenu.add(inputLocalFileMenuItem);
470 inputMenu.add(inputURLMenuItem);
471 inputMenu.add(inputTextboxMenuItem);
472 windowMenu.add(closeAll);
473 windowMenu.add(raiseRelated);
474 windowMenu.add(minimizeAssociated);
475 windowMenu.addSeparator();
476 // inputMenu.add(vamsasLoad);
479 protected void showExperimental_actionPerformed(boolean selected)
483 protected void groovyShell_actionPerformed()
487 protected void snapShotWindow_actionPerformed(ActionEvent e)
489 // TODO Auto-generated method stub
493 protected void showConsole_actionPerformed(ActionEvent e)
495 // TODO Auto-generated method stub
499 protected void showNews_actionPerformed(ActionEvent e)
501 // TODO Auto-generated method stub
505 protected void showMemusage_actionPerformed(ActionEvent e)
507 // TODO Auto-generated method stub
511 protected void garbageCollect_actionPerformed(ActionEvent e)
513 // TODO Auto-generated method stub
517 protected void vamsasStMenu_actionPerformed()
521 public void vamsasSave_actionPerformed(ActionEvent e)
531 protected void inputLocalFileMenuItem_actionPerformed(
532 jalview.gui.AlignViewport av)
541 * @throws FileFormatException
543 protected void inputURLMenuItem_actionPerformed(
544 jalview.gui.AlignViewport av) throws FileFormatException
554 protected void inputTextboxMenuItem_actionPerformed(
555 AlignmentViewPanel avp)
562 protected void quit()
572 protected void aboutMenuItem_actionPerformed(ActionEvent e)
576 protected void documentationMenuItem_actionPerformed()
586 protected void preferences_actionPerformed(ActionEvent e)
596 public void saveState_actionPerformed()
600 public void saveAsState_actionPerformed(ActionEvent e)
610 public void loadState_actionPerformed()
620 public void loadJalviewAlign_actionPerformed(ActionEvent e)
624 public void vamsasStart_actionPerformed(ActionEvent e)
629 public void inputSequence_actionPerformed(ActionEvent e)
634 public void vamsasStop_actionPerformed(ActionEvent e)
639 public void closeAll_actionPerformed(ActionEvent e)
644 public void raiseRelated_actionPerformed(ActionEvent e)
649 public void minimizeAssociated_actionPerformed(ActionEvent e)
654 public void vamsasImport_actionPerformed(ActionEvent e)