2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.io.FileFormatException;
25 import jalview.util.MessageManager;
26 import jalview.util.Platform;
28 import java.awt.FlowLayout;
29 import java.awt.Toolkit;
30 import java.awt.event.ActionEvent;
31 import java.awt.event.ActionListener;
33 import javax.swing.JCheckBoxMenuItem;
34 import javax.swing.JFrame;
35 import javax.swing.JMenu;
36 import javax.swing.JMenuBar;
37 import javax.swing.JMenuItem;
45 @SuppressWarnings("serial")
46 public class GDesktop extends JFrame
49 public static javax.swing.JTabbedPane createTabbedPane()
51 // now just always return JTabbedPane
52 return new javax.swing.JTabbedPane();
53 // // BH 2018 coercing jalview.jbgui.swing.JTabbedPane() for now
54 // if (/** @j2sNative false && */
58 // return new javax.swing.JTabbedPane();
61 // return (javax.swing.JTabbedPane) (Object) new jalview.jbgui.swing.JTabbedPane();
65 protected static JMenu windowMenu = new JMenu();
67 JMenuBar desktopMenubar = new JMenuBar();
69 JMenu FileMenu = new JMenu();
71 JMenu HelpMenu = new JMenu();
73 protected JMenu VamsasMenu = new JMenu();
75 protected JMenu VamsasStMenu = new JMenu();
77 JMenuItem inputLocalFileMenuItem = new JMenuItem();
79 JMenuItem inputURLMenuItem = new JMenuItem();
81 JMenuItem inputTextboxMenuItem = new JMenuItem();
83 JMenuItem quit = new JMenuItem();
85 JMenuItem aboutMenuItem = new JMenuItem();
87 JMenuItem documentationMenuItem = new JMenuItem();
89 FlowLayout flowLayout1 = new FlowLayout();
91 protected JMenu toolsMenu = new JMenu();
93 JMenuItem preferences = new JMenuItem();
95 JMenuItem saveState = new JMenuItem();
97 JMenuItem saveAsState = new JMenuItem();
99 JMenuItem loadState = new JMenuItem();
101 JMenu inputMenu = new JMenu();
103 protected JMenuItem vamsasStart = new JMenuItem();
105 protected JMenuItem vamsasImport = new JMenuItem();
107 protected JMenuItem vamsasSave = new JMenuItem();
109 JMenuItem inputSequence = new JMenuItem();
111 protected JMenuItem vamsasStop = new JMenuItem();
113 JMenuItem closeAll = new JMenuItem();
115 JMenuItem raiseRelated = new JMenuItem();
117 JMenuItem minimizeAssociated = new JMenuItem();
119 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
121 JMenuItem garbageCollect = new JMenuItem();
123 protected JMenuItem groovyShell;
125 protected JCheckBoxMenuItem experimentalFeatures;
127 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
129 protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
131 protected JMenuItem snapShotWindow = new JMenuItem();
134 * Creates a new GDesktop object.
142 this.setJMenuBar(desktopMenubar);
143 } catch (Exception e)
148 if (Platform.allowMnemonics())
150 //BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
151 // but here we want just not a Mac, period, right?
152 FileMenu.setMnemonic('F');
153 inputLocalFileMenuItem.setMnemonic('L');
154 VamsasMenu.setMnemonic('V');
155 inputURLMenuItem.setMnemonic('U');
156 inputTextboxMenuItem.setMnemonic('C');
157 quit.setMnemonic('Q');
158 saveState.setMnemonic('S');
159 loadState.setMnemonic('L');
160 inputMenu.setMnemonic('I');
170 private void jbInit() throws Exception
172 setName("jalview-desktop");
173 FileMenu.setText(MessageManager.getString("action.file"));
174 HelpMenu.setText(MessageManager.getString("action.help"));
175 VamsasMenu.setText("Vamsas");
176 VamsasMenu.setToolTipText(MessageManager
177 .getString("label.share_data_vamsas_applications"));
178 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
179 VamsasStMenu.setToolTipText(
180 MessageManager.getString("label.join_existing_vamsas_session"));
181 inputLocalFileMenuItem
182 .setText(MessageManager.getString("label.load_tree_from_file"));
183 inputLocalFileMenuItem.setAccelerator(
184 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
185 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
187 inputLocalFileMenuItem
188 .addActionListener(new java.awt.event.ActionListener()
191 public void actionPerformed(ActionEvent e)
193 inputLocalFileMenuItem_actionPerformed(null);
196 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
197 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
200 public void actionPerformed(ActionEvent e)
204 inputURLMenuItem_actionPerformed(null);
205 } catch (FileFormatException e1)
207 System.err.println("Error loading from URL: " + e1.getMessage());
212 .setText(MessageManager.getString("label.from_textbox"));
214 .addActionListener(new java.awt.event.ActionListener()
217 public void actionPerformed(ActionEvent e)
219 inputTextboxMenuItem_actionPerformed(null);
222 quit.setText(MessageManager.getString("action.quit"));
223 quit.addActionListener(new java.awt.event.ActionListener()
226 public void actionPerformed(ActionEvent e)
231 aboutMenuItem.setText(MessageManager.getString("label.about"));
232 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
235 public void actionPerformed(ActionEvent e)
237 aboutMenuItem_actionPerformed(e);
240 documentationMenuItem
241 .setText(MessageManager.getString("label.documentation"));
242 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
243 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
244 documentationMenuItem
245 .addActionListener(new java.awt.event.ActionListener()
248 public void actionPerformed(ActionEvent e)
250 documentationMenuItem_actionPerformed();
253 this.getContentPane().setLayout(flowLayout1);
254 windowMenu.setText(MessageManager.getString("label.window"));
255 preferences.setText(MessageManager.getString("label.preferences"));
256 preferences.addActionListener(new ActionListener()
259 public void actionPerformed(ActionEvent e)
261 preferences_actionPerformed(e);
264 toolsMenu.setText(MessageManager.getString("label.tools"));
265 saveState.setText(MessageManager.getString("action.save_project"));
266 saveState.addActionListener(new ActionListener()
269 public void actionPerformed(ActionEvent e)
271 saveState_actionPerformed();
274 saveAsState.setText(MessageManager.getString("action.save_project_as"));
275 saveAsState.addActionListener(new ActionListener()
278 public void actionPerformed(ActionEvent e)
280 saveAsState_actionPerformed(e);
283 loadState.setText(MessageManager.getString("action.load_project"));
284 loadState.addActionListener(new ActionListener()
287 public void actionPerformed(ActionEvent e)
289 loadState_actionPerformed();
292 inputMenu.setText(MessageManager.getString("label.input_alignment"));
294 .setText(MessageManager.getString("label.new_vamsas_session"));
295 vamsasStart.setVisible(false);
296 vamsasStart.addActionListener(new ActionListener()
299 public void actionPerformed(ActionEvent e)
301 vamsasStart_actionPerformed(e);
304 vamsasImport.setText(
305 MessageManager.getString("action.load_vamsas_session"));
306 vamsasImport.setVisible(false);
307 vamsasImport.addActionListener(new ActionListener()
310 public void actionPerformed(ActionEvent e)
312 vamsasImport_actionPerformed(e);
316 MessageManager.getString("action.save_vamsas_session"));
317 vamsasSave.setVisible(false);
318 vamsasSave.addActionListener(new ActionListener()
321 public void actionPerformed(ActionEvent e)
323 vamsasSave_actionPerformed(e);
327 .setText(MessageManager.getString("action.fetch_sequences"));
328 inputSequence.addActionListener(new ActionListener()
331 public void actionPerformed(ActionEvent e)
333 inputSequence_actionPerformed(e);
337 .setText(MessageManager.getString("label.stop_vamsas_session"));
338 vamsasStop.setVisible(false);
339 vamsasStop.addActionListener(new ActionListener()
342 public void actionPerformed(ActionEvent e)
344 vamsasStop_actionPerformed(e);
347 closeAll.setText(MessageManager.getString("action.close_all"));
348 closeAll.addActionListener(new ActionListener()
351 public void actionPerformed(ActionEvent e)
353 closeAll_actionPerformed(e);
356 raiseRelated.setText(
357 MessageManager.getString("action.raise_associated_windows"));
358 raiseRelated.addActionListener(new ActionListener()
361 public void actionPerformed(ActionEvent e)
363 raiseRelated_actionPerformed(e);
366 minimizeAssociated.setText(
367 MessageManager.getString("action.minimize_associated_windows"));
368 minimizeAssociated.addActionListener(new ActionListener()
371 public void actionPerformed(ActionEvent e)
373 minimizeAssociated_actionPerformed(e);
377 .setText(MessageManager.getString("label.collect_garbage"));
378 garbageCollect.addActionListener(new ActionListener()
381 public void actionPerformed(ActionEvent e)
383 garbageCollect_actionPerformed(e);
387 .setText(MessageManager.getString("label.show_memory_usage"));
388 showMemusage.addActionListener(new ActionListener()
391 public void actionPerformed(ActionEvent e)
393 showMemusage_actionPerformed(e);
397 .setText(MessageManager.getString("label.show_java_console"));
398 showConsole.addActionListener(new ActionListener()
401 public void actionPerformed(ActionEvent e)
403 showConsole_actionPerformed(e);
406 showNews.setText(MessageManager.getString("label.show_jalview_news"));
407 showNews.addActionListener(new ActionListener()
410 public void actionPerformed(ActionEvent e)
412 showNews_actionPerformed(e);
415 groovyShell = new JMenuItem();
416 groovyShell.setText(MessageManager.getString("label.groovy_console"));
417 groovyShell.addActionListener(new ActionListener()
420 public void actionPerformed(ActionEvent e)
422 groovyShell_actionPerformed();
425 experimentalFeatures = new JCheckBoxMenuItem();
427 .setText(MessageManager.getString("label.show_experimental"));
428 experimentalFeatures.setToolTipText(
429 MessageManager.getString("label.show_experimental_tip"));
430 experimentalFeatures.addActionListener(new ActionListener()
433 public void actionPerformed(ActionEvent e)
435 showExperimental_actionPerformed(experimentalFeatures.isSelected());
439 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
440 snapShotWindow.addActionListener(new ActionListener()
443 public void actionPerformed(ActionEvent e)
445 snapShotWindow_actionPerformed(e);
449 desktopMenubar.add(FileMenu);
450 desktopMenubar.add(toolsMenu);
451 VamsasMenu.setVisible(false);
452 desktopMenubar.add(VamsasMenu);
453 desktopMenubar.add(HelpMenu);
454 desktopMenubar.add(windowMenu);
455 FileMenu.add(inputMenu);
456 FileMenu.add(inputSequence);
457 FileMenu.addSeparator();
458 FileMenu.add(saveState);
459 FileMenu.add(saveAsState);
460 FileMenu.add(loadState);
461 FileMenu.addSeparator();
463 HelpMenu.add(aboutMenuItem);
464 HelpMenu.add(documentationMenuItem);
465 VamsasMenu.add(VamsasStMenu);
466 VamsasStMenu.setVisible(false);
467 VamsasMenu.add(vamsasStart);
468 VamsasMenu.add(vamsasImport);
469 VamsasMenu.add(vamsasSave);
470 VamsasMenu.add(vamsasStop);
471 toolsMenu.add(preferences);
472 if (!Platform.isJS())
474 toolsMenu.add(showMemusage);
475 toolsMenu.add(showConsole);
477 if (!Platform.isJS())
479 toolsMenu.add(showNews);
480 toolsMenu.add(garbageCollect);
481 toolsMenu.add(groovyShell);
483 toolsMenu.add(experimentalFeatures);
484 // toolsMenu.add(snapShotWindow);
485 inputMenu.add(inputLocalFileMenuItem);
486 inputMenu.add(inputURLMenuItem);
487 inputMenu.add(inputTextboxMenuItem);
488 windowMenu.add(closeAll);
489 windowMenu.add(raiseRelated);
490 windowMenu.add(minimizeAssociated);
491 windowMenu.addSeparator();
492 // inputMenu.add(vamsasLoad);
495 protected void showExperimental_actionPerformed(boolean selected)
499 protected void groovyShell_actionPerformed()
503 protected void snapShotWindow_actionPerformed(ActionEvent e)
505 // TODO Auto-generated method stub
509 protected void showConsole_actionPerformed(ActionEvent e)
511 // TODO Auto-generated method stub
515 protected void showNews_actionPerformed(ActionEvent e)
517 // TODO Auto-generated method stub
521 protected void showMemusage_actionPerformed(ActionEvent e)
523 // TODO Auto-generated method stub
527 protected void garbageCollect_actionPerformed(ActionEvent e)
529 // TODO Auto-generated method stub
533 protected void vamsasStMenu_actionPerformed()
537 public void vamsasSave_actionPerformed(ActionEvent e)
547 protected void inputLocalFileMenuItem_actionPerformed(
548 jalview.gui.AlignViewport av)
557 * @throws FileFormatException
559 protected void inputURLMenuItem_actionPerformed(
560 jalview.gui.AlignViewport av) throws FileFormatException
570 protected void inputTextboxMenuItem_actionPerformed(
571 AlignmentViewPanel avp)
578 protected void quit()
588 protected void aboutMenuItem_actionPerformed(ActionEvent e)
592 protected void documentationMenuItem_actionPerformed()
602 protected void preferences_actionPerformed(ActionEvent e)
612 public void saveState_actionPerformed()
616 public void saveAsState_actionPerformed(ActionEvent e)
626 public void loadState_actionPerformed()
636 public void loadJalviewAlign_actionPerformed(ActionEvent e)
640 public void vamsasStart_actionPerformed(ActionEvent e)
645 public void inputSequence_actionPerformed(ActionEvent e)
650 public void vamsasStop_actionPerformed(ActionEvent e)
655 public void closeAll_actionPerformed(ActionEvent e)
660 public void raiseRelated_actionPerformed(ActionEvent e)
665 public void minimizeAssociated_actionPerformed(ActionEvent e)
670 public void vamsasImport_actionPerformed(ActionEvent e)