2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.io.FileFormatException;
25 import jalview.util.MessageManager;
26 import jalview.util.Platform;
28 import java.awt.FlowLayout;
29 import java.awt.Toolkit;
30 import java.awt.event.ActionEvent;
31 import java.awt.event.ActionListener;
33 import javax.swing.JCheckBoxMenuItem;
34 import javax.swing.JFrame;
35 import javax.swing.JMenu;
36 import javax.swing.JMenuBar;
37 import javax.swing.JMenuItem;
40 * abstract class super to jalview.gui.Desktop
43 @SuppressWarnings("serial")
44 public abstract class GDesktop extends JFrame
47 public JMenu windowMenu = new JMenu(); // BH 2019.05.07 was static
49 JMenuBar desktopMenubar = new JMenuBar();
51 JMenu FileMenu = new JMenu();
53 JMenu HelpMenu = new JMenu();
55 protected JMenu VamsasMenu = new JMenu();
57 protected JMenu VamsasStMenu = new JMenu();
59 JMenuItem inputLocalFileMenuItem = new JMenuItem();
61 JMenuItem inputURLMenuItem = new JMenuItem();
63 JMenuItem inputTextboxMenuItem = new JMenuItem();
65 JMenuItem quit = new JMenuItem();
67 JMenuItem aboutMenuItem = new JMenuItem();
69 JMenuItem documentationMenuItem = new JMenuItem();
71 FlowLayout flowLayout1 = new FlowLayout();
73 protected JMenu toolsMenu = new JMenu();
75 JMenuItem preferences = new JMenuItem();
77 JMenuItem saveState = new JMenuItem();
79 JMenuItem saveAsState = new JMenuItem();
81 JMenuItem loadState = new JMenuItem();
83 JMenu inputMenu = new JMenu();
85 protected JMenuItem vamsasStart = new JMenuItem();
87 protected JMenuItem vamsasImport = new JMenuItem();
89 protected JMenuItem vamsasSave = new JMenuItem();
91 JMenuItem inputSequence = new JMenuItem();
93 protected JMenuItem vamsasStop = new JMenuItem();
95 JMenuItem closeAll = new JMenuItem();
97 JMenuItem raiseRelated = new JMenuItem();
99 JMenuItem minimizeAssociated = new JMenuItem();
101 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
103 JMenuItem garbageCollect = new JMenuItem();
105 protected JMenuItem groovyShell;
107 protected JCheckBoxMenuItem experimentalFeatures;
109 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
111 public JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
113 protected JMenuItem snapShotWindow = new JMenuItem();
116 * Creates a new GDesktop object.
123 this.setJMenuBar(desktopMenubar);
124 } catch (Exception e)
129 if (Platform.allowMnemonics())
131 //BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
132 // but here we want just not a Mac, period, right?
133 FileMenu.setMnemonic('F');
134 inputLocalFileMenuItem.setMnemonic('L');
135 VamsasMenu.setMnemonic('V');
136 inputURLMenuItem.setMnemonic('U');
137 inputTextboxMenuItem.setMnemonic('C');
138 quit.setMnemonic('Q');
139 saveState.setMnemonic('S');
140 loadState.setMnemonic('L');
141 inputMenu.setMnemonic('I');
151 private void jbInit() throws Exception
153 setName("jalview-desktop");
154 FileMenu.setText(MessageManager.getString("action.file"));
155 HelpMenu.setText(MessageManager.getString("action.help"));
156 VamsasMenu.setText("Vamsas");
157 VamsasMenu.setToolTipText(MessageManager
158 .getString("label.share_data_vamsas_applications"));
159 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
160 VamsasStMenu.setToolTipText(
161 MessageManager.getString("label.join_existing_vamsas_session"));
162 inputLocalFileMenuItem
163 .setText(MessageManager.getString("label.load_tree_from_file"));
164 inputLocalFileMenuItem.setAccelerator(
165 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
166 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
168 inputLocalFileMenuItem
169 .addActionListener(new java.awt.event.ActionListener()
172 public void actionPerformed(ActionEvent e)
174 inputLocalFileMenuItem_actionPerformed(null);
177 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
178 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
181 public void actionPerformed(ActionEvent e)
185 inputURLMenuItem_actionPerformed(null);
186 } catch (FileFormatException e1)
188 System.err.println("Error loading from URL: " + e1.getMessage());
193 .setText(MessageManager.getString("label.from_textbox"));
195 .addActionListener(new java.awt.event.ActionListener()
198 public void actionPerformed(ActionEvent e)
200 inputTextboxMenuItem_actionPerformed(null);
203 quit.setText(MessageManager.getString("action.quit"));
204 quit.addActionListener(new java.awt.event.ActionListener()
207 public void actionPerformed(ActionEvent e)
212 aboutMenuItem.setText(MessageManager.getString("label.about"));
213 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
216 public void actionPerformed(ActionEvent e)
218 aboutMenuItem_actionPerformed(e);
221 documentationMenuItem
222 .setText(MessageManager.getString("label.documentation"));
223 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
224 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
225 documentationMenuItem
226 .addActionListener(new java.awt.event.ActionListener()
229 public void actionPerformed(ActionEvent e)
231 documentationMenuItem_actionPerformed();
234 this.getContentPane().setLayout(flowLayout1);
235 windowMenu.setText(MessageManager.getString("label.window"));
236 preferences.setText(MessageManager.getString("label.preferences"));
237 preferences.addActionListener(new ActionListener()
240 public void actionPerformed(ActionEvent e)
242 preferences_actionPerformed(e);
245 toolsMenu.setText(MessageManager.getString("label.tools"));
246 saveState.setText(MessageManager.getString("action.save_project"));
247 saveState.addActionListener(new ActionListener()
250 public void actionPerformed(ActionEvent e)
252 saveState_actionPerformed();
255 saveAsState.setText(MessageManager.getString("action.save_project_as"));
256 saveAsState.addActionListener(new ActionListener()
259 public void actionPerformed(ActionEvent e)
261 saveAsState_actionPerformed(e);
264 loadState.setText(MessageManager.getString("action.load_project"));
265 loadState.addActionListener(new ActionListener()
268 public void actionPerformed(ActionEvent e)
270 loadState_actionPerformed();
273 inputMenu.setText(MessageManager.getString("label.input_alignment"));
275 .setText(MessageManager.getString("label.new_vamsas_session"));
276 vamsasStart.setVisible(false);
277 vamsasStart.addActionListener(new ActionListener()
280 public void actionPerformed(ActionEvent e)
282 vamsasStart_actionPerformed(e);
285 vamsasImport.setText(
286 MessageManager.getString("action.load_vamsas_session"));
287 vamsasImport.setVisible(false);
288 vamsasImport.addActionListener(new ActionListener()
291 public void actionPerformed(ActionEvent e)
293 vamsasImport_actionPerformed(e);
297 MessageManager.getString("action.save_vamsas_session"));
298 vamsasSave.setVisible(false);
299 vamsasSave.addActionListener(new ActionListener()
302 public void actionPerformed(ActionEvent e)
304 vamsasSave_actionPerformed(e);
308 .setText(MessageManager.getString("action.fetch_sequences"));
309 inputSequence.addActionListener(new ActionListener()
312 public void actionPerformed(ActionEvent e)
314 inputSequence_actionPerformed(e);
318 .setText(MessageManager.getString("label.stop_vamsas_session"));
319 vamsasStop.setVisible(false);
320 vamsasStop.addActionListener(new ActionListener()
323 public void actionPerformed(ActionEvent e)
325 vamsasStop_actionPerformed(e);
328 closeAll.setText(MessageManager.getString("action.close_all"));
329 closeAll.addActionListener(new ActionListener()
332 public void actionPerformed(ActionEvent e)
334 closeAll_actionPerformed(e);
337 raiseRelated.setText(
338 MessageManager.getString("action.raise_associated_windows"));
339 raiseRelated.addActionListener(new ActionListener()
342 public void actionPerformed(ActionEvent e)
344 raiseRelated_actionPerformed(e);
347 minimizeAssociated.setText(
348 MessageManager.getString("action.minimize_associated_windows"));
349 minimizeAssociated.addActionListener(new ActionListener()
352 public void actionPerformed(ActionEvent e)
354 minimizeAssociated_actionPerformed(e);
358 .setText(MessageManager.getString("label.collect_garbage"));
359 garbageCollect.addActionListener(new ActionListener()
362 public void actionPerformed(ActionEvent e)
364 garbageCollect_actionPerformed(e);
368 .setText(MessageManager.getString("label.show_memory_usage"));
369 showMemusage.addActionListener(new ActionListener()
372 public void actionPerformed(ActionEvent e)
374 showMemusage_actionPerformed(e);
378 .setText(MessageManager.getString("label.show_java_console"));
379 showConsole.addActionListener(new ActionListener()
382 public void actionPerformed(ActionEvent e)
384 showConsole_actionPerformed(e);
387 showNews.setText(MessageManager.getString("label.show_jalview_news"));
388 showNews.addActionListener(new ActionListener()
391 public void actionPerformed(ActionEvent e)
393 showNews_actionPerformed(e);
396 groovyShell = new JMenuItem();
397 groovyShell.setText(MessageManager.getString("label.groovy_console"));
398 groovyShell.addActionListener(new ActionListener()
401 public void actionPerformed(ActionEvent e)
403 groovyShell_actionPerformed();
406 experimentalFeatures = new JCheckBoxMenuItem();
408 .setText(MessageManager.getString("label.show_experimental"));
409 experimentalFeatures.setToolTipText(
410 MessageManager.getString("label.show_experimental_tip"));
411 experimentalFeatures.addActionListener(new ActionListener()
414 public void actionPerformed(ActionEvent e)
416 showExperimental_actionPerformed(experimentalFeatures.isSelected());
420 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
421 snapShotWindow.addActionListener(new ActionListener()
424 public void actionPerformed(ActionEvent e)
426 snapShotWindow_actionPerformed(e);
430 desktopMenubar.add(FileMenu);
431 desktopMenubar.add(toolsMenu);
432 VamsasMenu.setVisible(false);
433 desktopMenubar.add(VamsasMenu);
434 desktopMenubar.add(HelpMenu);
435 desktopMenubar.add(windowMenu);
436 FileMenu.add(inputMenu);
437 FileMenu.add(inputSequence);
438 FileMenu.addSeparator();
439 FileMenu.add(saveState);
440 FileMenu.add(saveAsState);
441 FileMenu.add(loadState);
442 FileMenu.addSeparator();
444 HelpMenu.add(aboutMenuItem);
445 HelpMenu.add(documentationMenuItem);
446 VamsasMenu.add(VamsasStMenu);
447 VamsasStMenu.setVisible(false);
448 VamsasMenu.add(vamsasStart);
449 VamsasMenu.add(vamsasImport);
450 VamsasMenu.add(vamsasSave);
451 VamsasMenu.add(vamsasStop);
452 toolsMenu.add(preferences);
453 if (!Platform.isJS())
455 toolsMenu.add(showMemusage);
456 toolsMenu.add(showConsole);
458 if (!Platform.isJS())
460 toolsMenu.add(showNews);
461 toolsMenu.add(garbageCollect);
462 toolsMenu.add(groovyShell);
464 toolsMenu.add(experimentalFeatures);
465 // toolsMenu.add(snapShotWindow);
466 inputMenu.add(inputLocalFileMenuItem);
467 inputMenu.add(inputURLMenuItem);
468 inputMenu.add(inputTextboxMenuItem);
469 windowMenu.add(closeAll);
470 windowMenu.add(raiseRelated);
471 windowMenu.add(minimizeAssociated);
472 windowMenu.addSeparator();
473 // inputMenu.add(vamsasLoad);
476 protected void showExperimental_actionPerformed(boolean selected)
480 protected void groovyShell_actionPerformed()
484 protected void snapShotWindow_actionPerformed(ActionEvent e)
486 // TODO Auto-generated method stub
490 protected void showConsole_actionPerformed(ActionEvent e)
492 // TODO Auto-generated method stub
496 protected void showNews_actionPerformed(ActionEvent e)
498 // TODO Auto-generated method stub
502 protected void showMemusage_actionPerformed(ActionEvent e)
504 // TODO Auto-generated method stub
508 protected void garbageCollect_actionPerformed(ActionEvent e)
510 // TODO Auto-generated method stub
514 protected void vamsasStMenu_actionPerformed()
518 public void vamsasSave_actionPerformed(ActionEvent e)
528 protected void inputLocalFileMenuItem_actionPerformed(
529 jalview.gui.AlignViewport av)
538 * @throws FileFormatException
540 protected void inputURLMenuItem_actionPerformed(
541 jalview.gui.AlignViewport av) throws FileFormatException
551 protected void inputTextboxMenuItem_actionPerformed(
552 AlignmentViewPanel avp)
559 protected void quit()
569 protected void aboutMenuItem_actionPerformed(ActionEvent e)
573 protected void documentationMenuItem_actionPerformed()
583 protected void preferences_actionPerformed(ActionEvent e)
593 public void saveState_actionPerformed()
597 public void saveAsState_actionPerformed(ActionEvent e)
607 public void loadState_actionPerformed()
617 public void loadJalviewAlign_actionPerformed(ActionEvent e)
621 public void vamsasStart_actionPerformed(ActionEvent e)
626 public void inputSequence_actionPerformed(ActionEvent e)
631 public void vamsasStop_actionPerformed(ActionEvent e)
636 public void closeAll_actionPerformed(ActionEvent e)
641 public void raiseRelated_actionPerformed(ActionEvent e)
646 public void minimizeAssociated_actionPerformed(ActionEvent e)
651 public void vamsasImport_actionPerformed(ActionEvent e)