2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.jbgui;
23 import jalview.api.AlignmentViewPanel;
24 import jalview.io.FileFormatException;
25 import jalview.util.MessageManager;
26 import jalview.util.Platform;
28 import java.awt.FlowLayout;
29 import java.awt.Toolkit;
30 import java.awt.event.ActionEvent;
31 import java.awt.event.ActionListener;
33 import javax.swing.JCheckBoxMenuItem;
34 import javax.swing.JFrame;
35 import javax.swing.JMenu;
36 import javax.swing.JMenuBar;
37 import javax.swing.JMenuItem;
45 public class GDesktop extends JFrame
48 public static javax.swing.JTabbedPane createTabbedPane()
50 // now just always return JTabbedPane
51 return new javax.swing.JTabbedPane();
52 // // BH 2018 coercing jalview.jbgui.swing.JTabbedPane() for now
53 // if (/** @j2sNative false && */
57 // return new javax.swing.JTabbedPane();
60 // return (javax.swing.JTabbedPane) (Object) new jalview.jbgui.swing.JTabbedPane();
64 protected static JMenu windowMenu = new JMenu();
66 JMenuBar desktopMenubar = new JMenuBar();
68 JMenu FileMenu = new JMenu();
70 JMenu HelpMenu = new JMenu();
72 protected JMenu VamsasMenu = new JMenu();
74 protected JMenu VamsasStMenu = new JMenu();
76 JMenuItem inputLocalFileMenuItem = new JMenuItem();
78 JMenuItem inputURLMenuItem = new JMenuItem();
80 JMenuItem inputTextboxMenuItem = new JMenuItem();
82 JMenuItem quit = new JMenuItem();
84 JMenuItem aboutMenuItem = new JMenuItem();
86 JMenuItem documentationMenuItem = new JMenuItem();
88 FlowLayout flowLayout1 = new FlowLayout();
90 protected JMenu toolsMenu = new JMenu();
92 JMenuItem preferences = new JMenuItem();
94 JMenuItem saveState = new JMenuItem();
96 JMenuItem saveAsState = new JMenuItem();
98 JMenuItem loadState = new JMenuItem();
100 JMenu inputMenu = new JMenu();
102 protected JMenuItem vamsasStart = new JMenuItem();
104 protected JMenuItem vamsasImport = new JMenuItem();
106 protected JMenuItem vamsasSave = new JMenuItem();
108 JMenuItem inputSequence = new JMenuItem();
110 protected JMenuItem vamsasStop = new JMenuItem();
112 JMenuItem closeAll = new JMenuItem();
114 JMenuItem raiseRelated = new JMenuItem();
116 JMenuItem minimizeAssociated = new JMenuItem();
118 protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
120 JMenuItem garbageCollect = new JMenuItem();
122 protected JMenuItem groovyShell;
124 protected JCheckBoxMenuItem experimentalFeatures;
126 protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
128 protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
130 protected JMenuItem snapShotWindow = new JMenuItem();
133 * Creates a new GDesktop object.
141 this.setJMenuBar(desktopMenubar);
142 } catch (Exception e)
147 if (Platform.allowMnemonics())
149 //BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
150 // but here we want just not a Mac, period, right?
151 FileMenu.setMnemonic('F');
152 inputLocalFileMenuItem.setMnemonic('L');
153 VamsasMenu.setMnemonic('V');
154 inputURLMenuItem.setMnemonic('U');
155 inputTextboxMenuItem.setMnemonic('C');
156 quit.setMnemonic('Q');
157 saveState.setMnemonic('S');
158 loadState.setMnemonic('L');
159 inputMenu.setMnemonic('I');
169 private void jbInit() throws Exception
172 FileMenu.setText(MessageManager.getString("action.file"));
173 HelpMenu.setText(MessageManager.getString("action.help"));
174 VamsasMenu.setText("Vamsas");
175 VamsasMenu.setToolTipText(MessageManager
176 .getString("label.share_data_vamsas_applications"));
177 VamsasStMenu.setText(MessageManager.getString("label.connect_to"));
178 VamsasStMenu.setToolTipText(
179 MessageManager.getString("label.join_existing_vamsas_session"));
180 inputLocalFileMenuItem
181 .setText(MessageManager.getString("label.load_tree_from_file"));
182 inputLocalFileMenuItem.setAccelerator(
183 javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
184 Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(),
186 inputLocalFileMenuItem
187 .addActionListener(new java.awt.event.ActionListener()
190 public void actionPerformed(ActionEvent e)
192 inputLocalFileMenuItem_actionPerformed(null);
195 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
196 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
199 public void actionPerformed(ActionEvent e)
203 inputURLMenuItem_actionPerformed(null);
204 } catch (FileFormatException e1)
206 System.err.println("Error loading from URL: " + e1.getMessage());
211 .setText(MessageManager.getString("label.from_textbox"));
213 .addActionListener(new java.awt.event.ActionListener()
216 public void actionPerformed(ActionEvent e)
218 inputTextboxMenuItem_actionPerformed(null);
221 quit.setText(MessageManager.getString("action.quit"));
222 quit.addActionListener(new java.awt.event.ActionListener()
225 public void actionPerformed(ActionEvent e)
230 aboutMenuItem.setText(MessageManager.getString("label.about"));
231 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
234 public void actionPerformed(ActionEvent e)
236 aboutMenuItem_actionPerformed(e);
239 documentationMenuItem
240 .setText(MessageManager.getString("label.documentation"));
241 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
242 .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
243 documentationMenuItem
244 .addActionListener(new java.awt.event.ActionListener()
247 public void actionPerformed(ActionEvent e)
249 documentationMenuItem_actionPerformed();
252 this.getContentPane().setLayout(flowLayout1);
253 windowMenu.setText(MessageManager.getString("label.window"));
254 preferences.setText(MessageManager.getString("label.preferences"));
255 preferences.addActionListener(new ActionListener()
258 public void actionPerformed(ActionEvent e)
260 preferences_actionPerformed(e);
263 toolsMenu.setText(MessageManager.getString("label.tools"));
264 saveState.setText(MessageManager.getString("action.save_project"));
265 saveState.addActionListener(new ActionListener()
268 public void actionPerformed(ActionEvent e)
270 saveState_actionPerformed();
273 saveAsState.setText(MessageManager.getString("action.save_project_as"));
274 saveAsState.addActionListener(new ActionListener()
277 public void actionPerformed(ActionEvent e)
279 saveAsState_actionPerformed(e);
282 loadState.setText(MessageManager.getString("action.load_project"));
283 loadState.addActionListener(new ActionListener()
286 public void actionPerformed(ActionEvent e)
288 loadState_actionPerformed();
291 inputMenu.setText(MessageManager.getString("label.input_alignment"));
293 .setText(MessageManager.getString("label.new_vamsas_session"));
294 vamsasStart.setVisible(false);
295 vamsasStart.addActionListener(new ActionListener()
298 public void actionPerformed(ActionEvent e)
300 vamsasStart_actionPerformed(e);
303 vamsasImport.setText(
304 MessageManager.getString("action.load_vamsas_session"));
305 vamsasImport.setVisible(false);
306 vamsasImport.addActionListener(new ActionListener()
309 public void actionPerformed(ActionEvent e)
311 vamsasImport_actionPerformed(e);
315 MessageManager.getString("action.save_vamsas_session"));
316 vamsasSave.setVisible(false);
317 vamsasSave.addActionListener(new ActionListener()
320 public void actionPerformed(ActionEvent e)
322 vamsasSave_actionPerformed(e);
326 .setText(MessageManager.getString("action.fetch_sequences"));
327 inputSequence.addActionListener(new ActionListener()
330 public void actionPerformed(ActionEvent e)
332 inputSequence_actionPerformed(e);
336 .setText(MessageManager.getString("label.stop_vamsas_session"));
337 vamsasStop.setVisible(false);
338 vamsasStop.addActionListener(new ActionListener()
341 public void actionPerformed(ActionEvent e)
343 vamsasStop_actionPerformed(e);
346 closeAll.setText(MessageManager.getString("action.close_all"));
347 closeAll.addActionListener(new ActionListener()
350 public void actionPerformed(ActionEvent e)
352 closeAll_actionPerformed(e);
355 raiseRelated.setText(
356 MessageManager.getString("action.raise_associated_windows"));
357 raiseRelated.addActionListener(new ActionListener()
360 public void actionPerformed(ActionEvent e)
362 raiseRelated_actionPerformed(e);
365 minimizeAssociated.setText(
366 MessageManager.getString("action.minimize_associated_windows"));
367 minimizeAssociated.addActionListener(new ActionListener()
370 public void actionPerformed(ActionEvent e)
372 minimizeAssociated_actionPerformed(e);
376 .setText(MessageManager.getString("label.collect_garbage"));
377 garbageCollect.addActionListener(new ActionListener()
380 public void actionPerformed(ActionEvent e)
382 garbageCollect_actionPerformed(e);
386 .setText(MessageManager.getString("label.show_memory_usage"));
387 showMemusage.addActionListener(new ActionListener()
390 public void actionPerformed(ActionEvent e)
392 showMemusage_actionPerformed(e);
396 .setText(MessageManager.getString("label.show_java_console"));
397 showConsole.addActionListener(new ActionListener()
400 public void actionPerformed(ActionEvent e)
402 showConsole_actionPerformed(e);
405 showNews.setText(MessageManager.getString("label.show_jalview_news"));
406 showNews.addActionListener(new ActionListener()
409 public void actionPerformed(ActionEvent e)
411 showNews_actionPerformed(e);
414 groovyShell = new JMenuItem();
415 groovyShell.setText(MessageManager.getString("label.groovy_console"));
416 groovyShell.addActionListener(new ActionListener()
419 public void actionPerformed(ActionEvent e)
421 groovyShell_actionPerformed();
424 experimentalFeatures = new JCheckBoxMenuItem();
426 .setText(MessageManager.getString("label.show_experimental"));
427 experimentalFeatures.setToolTipText(
428 MessageManager.getString("label.show_experimental_tip"));
429 experimentalFeatures.addActionListener(new ActionListener()
432 public void actionPerformed(ActionEvent e)
434 showExperimental_actionPerformed(experimentalFeatures.isSelected());
438 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
439 snapShotWindow.addActionListener(new ActionListener()
442 public void actionPerformed(ActionEvent e)
444 snapShotWindow_actionPerformed(e);
448 desktopMenubar.add(FileMenu);
449 desktopMenubar.add(toolsMenu);
450 VamsasMenu.setVisible(false);
451 desktopMenubar.add(VamsasMenu);
452 desktopMenubar.add(HelpMenu);
453 desktopMenubar.add(windowMenu);
454 FileMenu.add(inputMenu);
455 FileMenu.add(inputSequence);
456 FileMenu.addSeparator();
457 FileMenu.add(saveState);
458 FileMenu.add(saveAsState);
459 FileMenu.add(loadState);
460 FileMenu.addSeparator();
462 HelpMenu.add(aboutMenuItem);
463 HelpMenu.add(documentationMenuItem);
464 VamsasMenu.add(VamsasStMenu);
465 VamsasStMenu.setVisible(false);
466 VamsasMenu.add(vamsasStart);
467 VamsasMenu.add(vamsasImport);
468 VamsasMenu.add(vamsasSave);
469 VamsasMenu.add(vamsasStop);
470 toolsMenu.add(preferences);
471 if (!Platform.isJS())
473 toolsMenu.add(showMemusage);
474 toolsMenu.add(showConsole);
476 if (!Platform.isJS())
478 toolsMenu.add(showNews);
479 toolsMenu.add(garbageCollect);
480 toolsMenu.add(groovyShell);
482 toolsMenu.add(experimentalFeatures);
483 // toolsMenu.add(snapShotWindow);
484 inputMenu.add(inputLocalFileMenuItem);
485 inputMenu.add(inputURLMenuItem);
486 inputMenu.add(inputTextboxMenuItem);
487 windowMenu.add(closeAll);
488 windowMenu.add(raiseRelated);
489 windowMenu.add(minimizeAssociated);
490 windowMenu.addSeparator();
491 // inputMenu.add(vamsasLoad);
494 protected void showExperimental_actionPerformed(boolean selected)
498 protected void groovyShell_actionPerformed()
502 protected void snapShotWindow_actionPerformed(ActionEvent e)
504 // TODO Auto-generated method stub
508 protected void showConsole_actionPerformed(ActionEvent e)
510 // TODO Auto-generated method stub
514 protected void showNews_actionPerformed(ActionEvent e)
516 // TODO Auto-generated method stub
520 protected void showMemusage_actionPerformed(ActionEvent e)
522 // TODO Auto-generated method stub
526 protected void garbageCollect_actionPerformed(ActionEvent e)
528 // TODO Auto-generated method stub
532 protected void vamsasStMenu_actionPerformed()
536 public void vamsasSave_actionPerformed(ActionEvent e)
546 protected void inputLocalFileMenuItem_actionPerformed(
547 jalview.gui.AlignViewport av)
556 * @throws FileFormatException
558 protected void inputURLMenuItem_actionPerformed(
559 jalview.gui.AlignViewport av) throws FileFormatException
569 protected void inputTextboxMenuItem_actionPerformed(
570 AlignmentViewPanel avp)
577 protected void quit()
587 protected void aboutMenuItem_actionPerformed(ActionEvent e)
591 protected void documentationMenuItem_actionPerformed()
601 protected void preferences_actionPerformed(ActionEvent e)
611 public void saveState_actionPerformed()
615 public void saveAsState_actionPerformed(ActionEvent e)
625 public void loadState_actionPerformed()
635 public void loadJalviewAlign_actionPerformed(ActionEvent e)
639 public void vamsasStart_actionPerformed(ActionEvent e)
644 public void inputSequence_actionPerformed(ActionEvent e)
649 public void vamsasStop_actionPerformed(ActionEvent e)
654 public void closeAll_actionPerformed(ActionEvent e)
659 public void raiseRelated_actionPerformed(ActionEvent e)
664 public void minimizeAssociated_actionPerformed(ActionEvent e)
669 public void vamsasImport_actionPerformed(ActionEvent e)